PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla008778
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ARR-B
Protein Properties Length: 559aa    MW: 62345.4 Da    PI: 6.1127
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla008778genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.27.6e-28315368256
    G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                 +++WtpeLH++Fv+aveqL G ++A+P++ilelmkv+gLt+++v+SHLQkYR++
  Cla008778 315 LKVDWTPELHRKFVQAVEQL-GVNQAIPSRILELMKVEGLTRHNVASHLQKYRMH 368
                5899****************.9*******************************96 PP
2Response_reg24.61.3e-09201261109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+ d + + +  +++ le+ +y +v +  +  +al  +  k   +++ ++ +  ++ +G   +k +++++ +lp i+++     +++ +++ +Ga 
     Cla008778  20 VLLLDGDSSSAAEIKTKLEEMEY-VVVTYCNENDALSAISSKPetFHVAIVEVTTSNHNGN--FKFLEAAK-DLPTIMISNIHCLSTMMKCIALGAI 112
                   78888899999999*********.***************665555**************95..56666655.9*******9999************* PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   +fl Kp ++++l++
     Cla008778 113 EFLQKPLSEDKLRN 126
                   ***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521725.69E-1516134IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.9E-1416161No hitNo description
PROSITE profilePS5011018.38819132IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.7E-720127IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.82E-721131No hitNo description
PROSITE profilePS5129416.769311370IPR017930Myb domain
SuperFamilySSF466892.06E-18312371IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-26312370IPR009057Homeodomain-like
TIGRFAMsTIGR015574.0E-25314369IPR006447Myb domain, plants
PfamPF002495.9E-8317366IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MVCTANDLHG WKDFPKGLRV LLLDGDSSSA AEIKTKLEEM EYVVVTYCNE NDALSAISSK  60
PETFHVAIVE VTTSNHNGNF KFLEAAKDLP TIMISNIHCL STMMKCIALG AIEFLQKPLS  120
EDKLRNIWQH VVHKAFNAGG SPVPNSLKPI KESVASMLHL ELENSENENQ IQKELEISSR  180
NDDNDHELLE GSDKYPAPST PQQKHGMRLV DDGDCHDQLN SSLEKECGEQ DGESKSVETT  240
CINSLGEGTS QVENSQLPDQ EGIKEEENSA DGCGAASNID HDTHDRDNIS SSEKNKTKPC  300
GVNNPCGTKV SRKKLKVDWT PELHRKFVQA VEQLGVNQAI PSRILELMKV EGLTRHNVAS  360
HLQKYRMHKR HILPKEEDGS WSHSKDPMKK NYYPQRPVMA FPPPYHSNHI MPVAPIYPPW  420
GHMACPSPGV QMWVPPGYPP WRPPEIWPWK SYPGMHADTW GCPVTPPPHS PLSSHPQQHI  480
SRFESTDPYD KSYGIAFSPI DLQLADEEID KVVKEAISKP WLPLPLGLKP PSTESVLSEL  540
SRQGISTVPS HINGSKLLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A2e-16319368655Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818600.0LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008448736.10.0PREDICTED: two-component response regulator-like APRR2 isoform X1
SwissprotQ6LA431e-143APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A1S3BKD90.0A0A1S3BKD9_CUCME; two-component response regulator-like APRR2 isoform X1
STRINGXP_008448736.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35663465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-136ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]