PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla008749
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family NF-YC
Protein Properties Length: 200aa    MW: 22498.5 Da    PI: 9.7499
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla008749genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC26.41.5e-081141761173
      NF-YC  11 ekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrt 73 
                e++++ k  ++P+ rikki++ ++   +i  ea  l+ ka e+f++++   ++  + + ++++
  Cla008749 114 EEEAEEKICKFPMHRIKKIMRDENFDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDHKKS 176
                5566778889***********9888889******************99888887666555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.6E-1487182IPR009072Histone-fold
PfamPF008084.6E-14123183IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.102.9E-15124184IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MASSKKSSIA TEAKSKEAGT SKPAPKTKTH NNARKSDNDD SKKKKKKKKI TTNNGSVKDN  60
EALAISAPGG SASEEDDADE HRAETTSKKP NASKSKKIKR NHAKKEENGY AAEEEEAEEK  120
ICKFPMHRIK KIMRDENFDL RINQEALFLV NKASEMFLVQ FCKDAYACCA QDHKKSLAYK  180
HLCNVPILYF DAAVYFHWLL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14248KKKKKKK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819221e-140LN681922.1 Cucumis melo genomic scaffold, anchoredscaffold00082.
GenBankLN7132651e-140LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008463933.18e-78PREDICTED: DNA polymerase epsilon subunit C
TrEMBLA0A1S3CKU72e-76A0A1S3CKU7_CUCME; DNA polymerase epsilon subunit C
STRINGXP_008463933.13e-77(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120163031
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.12e-18nuclear factor Y, subunit C10