PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla008745
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C3H
Protein Properties Length: 917aa    MW: 100220 Da    PI: 5.0043
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla008745genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.98.2e-0986113127
                --S---SGGGGTS.--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartG.tCkyGdrCkFaHgp 27 
                +kt+lC++f+r    C++G+ C++aHg+
  Cla008745  86 WKTSLCSYFRRHSgSCSHGSECRYAHGE 113
                8**********889************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.9E-1382119IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-684117IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.20685114IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-485113IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-686113IPR000571Zinc finger, CCCH-type
CDDcd005902.77E-6171236No hitNo description
SuperFamilySSF549285.59E-6174247IPR012677Nucleotide-binding alpha-beta plait domain
Gene3DG3DSA:3.30.70.3302.2E-5175236IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5168737.611297917IPR010280(Uracil-5)-methyltransferase family
SuperFamilySSF533351.72E-46300325IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.72E-46357496IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.72E-46525648IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1507.1E-58546648IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF138472.1E-9592650IPR025714Methyltransferase domain
CDDcd024407.78E-7594648No hitNo description
Gene3DG3DSA:3.40.50.1507.1E-58769798IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.72E-46772783IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.72E-46818866IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1507.1E-58832856IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1507.1E-58892917IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.72E-46901917IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006396Biological ProcessRNA processing
GO:0000166Molecular Functionnucleotide binding
GO:0008173Molecular FunctionRNA methyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 917 aa     Download sequence    Send to blast
MAASSIEETL VTEPPKTSDD HLKSSVDAQH NTDNFQLTTA LPPESLPDQS DCQSNGAGVA  60
REKRKRTDPD SNTENPKPDP SLNPLWKTSL CSYFRRHSGS CSHGSECRYA HGEEELRQRP  120
DNSWDPTSER AKKVMKVGEE VKEEEVMMTE VVVDDDDEDG NDGRDNGLSK CLVHLPRKWN  180
SENLRNYLNE QSILFKSAKK KKGMTVGFVS FESTEQLKSS VEELQGKIIG KKNLKVADVI  240
PRSFEKTIKS SMDCDNSSVS SAAVSLTSND DEDAANTNDG SSTPNDSVSK GKSAREVVAP  300
LAHMSYSDQL EHKKNSLLHV LKKLTRNARK ACPHGVSLPE WMLKSRDIGG IACSFEGIVQ  360
SPIINGYRNK CEFSVGYSLE GKPTVGFMLG NFREGVTAVE EPENCPNVSR ISCKYALIFQ  420
EFLQLSSLPI WNRFKNIGFW RQLTVREGRT PGKLIDSDNS DASISEVMLI VQVCSVGVEC  480
ELMTSEFKRL AQAFAEGSVA NSPPLPLTAL HHQGISNAAP ADTPLQPLTI PRVHGTELEA  540
TNDAVEPRIH DYISNLKFCI SPTAFFQVNT LAAEKLYSLA GDWAGLGPDT LLFDICCGTG  600
TIGLTLAHRV GMVVGIEMNA SAVSDAQRNA EINGISNCKF ICAKAEDVMG SLLKEYLKGT  660
NKEGEILSNT NGSDGISNAS KESEEIPGAS EKNEETPGTS EKCEEIQGAS EKSDEVPATG  720
ERNALLDDKE QDPVVNHVPE NDASVLKTSE NASEENGGQL NRCNPESGTK QFKNVVAIVD  780
PPRGGLHPIV SDEGSENSYA SETTSVSSNS EPSVLFNSFS VSLFSKINTY FTPWRSYISC  840
NPESLMANAI ELCTPSSEKI EKGNKNNRGW RNMGSAGLAR HRVKSMPMSE PFRPVKAMAV  900
DLFPHTPHCE MVMLLER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5xj1_A4e-18550660262376Uncharacterized RNA methyltransferase SP_1029
5xj2_A4e-18550660262376Uncharacterized RNA methyltransferase SP_1029
5xj2_B4e-18550660262376Uncharacterized RNA methyltransferase SP_1029
5xj2_C4e-18550660262376Uncharacterized RNA methyltransferase SP_1029
5xj2_D4e-18550660262376Uncharacterized RNA methyltransferase SP_1029
5zq0_A4e-18550660263377Uncharacterized RNA methyltransferase SP_1029
5zq1_A4e-18550660262376Uncharacterized RNA methyltransferase SP_1029
5zq8_A4e-18550660262376Uncharacterized RNA methyltransferase SP_1029
5zq8_B4e-18550660262376Uncharacterized RNA methyltransferase SP_1029
5zth_A4e-18550660263377Uncharacterized RNA methyltransferase SP_1029
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819221e-151LN681922.1 Cucumis melo genomic scaffold, anchoredscaffold00082.
GenBankLN7132651e-151LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008463939.10.0PREDICTED: zinc finger CCCH domain-containing protein 24
SwissprotQ8L7S30.0C3H24_ARATH; Zinc finger CCCH domain-containing protein 24
TrEMBLA0A1S3CKC60.0A0A1S3CKC6_CUCME; zinc finger CCCH domain-containing protein 24
STRINGXP_008463939.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88541720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28450.20.0C3H family protein
Publications ? help Back to Top
  1. Wang Y, et al.
    Identification of tRNA nucleoside modification genes critical for stress response and development in rice and Arabidopsis.
    BMC Plant Biol., 2017. 17(1): p. 261
    [PMID:29268705]