PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla008721 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | TCP | ||||||||
Protein Properties | Length: 182aa MW: 20185.6 Da PI: 5.3317 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 100.5 | 3.1e-31 | 38 | 105 | 8 | 71 |
TCP 8 hskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa....s 71 +++h+kv gRdRR+Rl+ +caar+F+L++eLG ++d++t+eWLl++a+p+i++ltg + sa Cla008721 38 PKDRHAKVHGRDRRIRLPPLCAARVFQLTRELGNKTDGQTVEWLLKKAEPSIIALTGKDIASAsldfP 105 59********************************************************5555533332 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.0E-27 | 38 | 123 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 25.43 | 38 | 92 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MGSKNMRVKK ATSNSPRNAP KSNSPNASES KLIPSKAPKD RHAKVHGRDR RIRLPPLCAA 60 RVFQLTRELG NKTDGQTVEW LLKKAEPSII ALTGKDIASA SLDFPGCKPF DPTSSNLSTT 120 TSCFEEETFG VNNYAFPMVN ECIPLPNYEF DLVSDFDMEL FAHHIATLQE VAENSEQEDD 180 DD |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681935 | 0.0 | LN681935.1 Cucumis melo genomic scaffold, unanchored_scaffold00115. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008465370.1 | 1e-118 | PREDICTED: transcription factor TCP7 | ||||
TrEMBL | A0A1S3CNQ2 | 1e-116 | A0A1S3CNQ2_CUCME; transcription factor TCP7 | ||||
STRING | XP_008465370.1 | 1e-117 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3819 | 33 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 2e-28 | TCP family protein |