PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla008649

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

bZIP

Protein Properties

Length: 441aa MW: 49474.8 Da PI: 6.9877

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla008649	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.4	1e-10	207	248	4	45
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le +L++ ++L Cla008649 207 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQDL 248 6889*************************9777777666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.3E-6	204	281	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.186	206	250	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	6.5E-8	207	249	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.39E-7	208	251	No hit	No description
CDD	cd14708	1.15E-20	208	254	No hit	No description
Gene3D	G3DSA:1.20.5.170	5.2E-8	209	252	No hit	No description
PROSITE pattern	PS00036	0	211	226	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	4.5E-28	291	365	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence Send to blast
MGSQRVEETG PSSHYHHHLP YNSLLYGINN NNLSSTLINH DGQSFDFGEL EQAIVLQGLG 60 TKNKLDHHEP KQSFFSGKPA ATLEMFPSWP IKHQQTSRGI SLRRREESSD ESGAAVNTHT 120 INKSNNQEGH LELEIEKEES EMSKKGCCSS SSSGQDQSFI QKHLQQIQPE MILSDISTTA 180 LSSQHQSLQQ KRKGCGSIST SQKQLDAKTL RRLAQNREAA RKSRLRKKAY VQQLESSRIK 240 LTQLEQDLQR ARSQGLFLGA GGTGGGIVSP ASAIFDMEYV RWLEEDHRHT VELRGGLEAH 300 LPDVDLRVRV DACICHYNEI FRLKGEAAKS DIFHLITGIW MSPAERCFLW IGGFRPSDLI 360 KMLMSQLDPI TEQQVMEIYK LQHSSQQAED ALSQGLDQLH RSLTDIIAGG PIIDGINHMV 420 LAMDKLSSLQ GFLHQVIITF F

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence Send to blast

MGSQRVEETG PSSHYHHHLP YNSLLYGINN NNLSSTLINH DGQSFDFGEL EQAIVLQGLG  60
TKNKLDHHEP KQSFFSGKPA ATLEMFPSWP IKHQQTSRGI SLRRREESSD ESGAAVNTHT  120
INKSNNQEGH LELEIEKEES EMSKKGCCSS SSSGQDQSFI QKHLQQIQPE MILSDISTTA  180
LSSQHQSLQQ KRKGCGSIST SQKQLDAKTL RRLAQNREAA RKSRLRKKAY VQQLESSRIK  240
LTQLEQDLQR ARSQGLFLGA GGTGGGIVSP ASAIFDMEYV RWLEEDHRHT VELRGGLEAH  300
LPDVDLRVRV DACICHYNEI FRLKGEAAKS DIFHLITGIW MSPAERCFLW IGGFRPSDLI  360
KMLMSQLDPI TEQQVMEIYK LQHSSQQAED ALSQGLDQLH RSLTDIIAGG PIIDGINHMV  420
LAMDKLSSLQ GFLHQVIITF F

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022985781.1	0.0	transcription factor TGA9-like isoform X1
Swissprot	Q93XM6	1e-142	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A1S3C8S4	0.0	A0A1S3C8S4_CUCME; transcription factor TGA6-like isoform X2
STRING	XP_008458583.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4555	33	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	1e-105	bZIP family protein

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]