PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla008635 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | NF-YB | ||||||||
Protein Properties | Length: 161aa MW: 17972 Da PI: 4.8097 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 33.1 | 1.4e-10 | 11 | 107 | 7 | 94 |
NF-YB 7 flPianvsrimkkvlPanak...is..kdaketvqecvsefisfvt....seasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 +lP + v r++k+ l + ++ is kd+ e + fi +++ s ++d c++ kr+ti+++d+l al ++ f + v plkv l+++r + Cla008635 11 ELPKTIVRRVVKEKLSQCSRdqdISvnKDSLLAFCESARIFIHYLSatslSRSNDICNESKRQTIKAEDVLKALEDMEFPELVRPLKVSLNEFRRKN 107 57888889999998876443222551155555555666779999872223467899*************************************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 4.0E-28 | 11 | 149 | IPR009072 | Histone-fold |
Pfam | PF00808 | 4.9E-7 | 11 | 84 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 1.62E-21 | 12 | 125 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MEKKVGAGIE ELPKTIVRRV VKEKLSQCSR DQDISVNKDS LLAFCESARI FIHYLSATSL 60 SRSNDICNES KRQTIKAEDV LKALEDMEFP ELVRPLKVSL NEFRRKNAGK KAAASREKEV 120 KKKRKVEEPT AEGTDGDSND GVGNEDNDEA EDEDEIGASD N |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 103 | 124 | RRKNAGKKAAASREKEVKKKRK |
2 | 115 | 124 | REKEVKKKRK |
3 | 120 | 125 | KKKRKV |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681842 | 1e-74 | LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022. | |||
GenBank | LN713259 | 1e-74 | LN713259.1 Cucumis melo genomic chromosome, chr_5. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022958709.1 | 2e-78 | DNA polymerase epsilon subunit 3 | ||||
Refseq | XP_022958710.1 | 2e-78 | DNA polymerase epsilon subunit 3 | ||||
Refseq | XP_023533668.1 | 1e-78 | DNA polymerase epsilon subunit 3 | ||||
Refseq | XP_023533669.1 | 1e-78 | DNA polymerase epsilon subunit 3 | ||||
TrEMBL | A0A1S3BNA4 | 5e-75 | A0A1S3BNA4_CUCME; DNA polymerase epsilon subunit D | ||||
STRING | XP_008449581.1 | 8e-76 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11863 | 32 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27470.1 | 1e-37 | nuclear factor Y, subunit B11 |