PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla008607

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

NF-YC

Protein Properties

Length: 263aa MW: 29225 Da PI: 4.3878

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla008607	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	39.2	1.5e-12	1	69	30	98
NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++adedv +i+ +P l+ska elf+ +l r++ + + +t++ ++++++ ++fdfl d+v + Cla008607 1 MQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYEITLKRGAKTMNSLHLKQCIQTFNVFDFLRDVVGK 69 899**************************************************************9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00808	1.4E-11	1	54	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	1.1E-18	1	70	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	1.9E-17	1	68	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MQADEDVGKI AMAVPLLVSK ALELFLQDLC DRTYEITLKR GAKTMNSLHL KQCIQTFNVF 60 DFLRDVVGKV PDLGGSDAAE DRNNSKRRKV VDEDGGNDSD EEAKRSKMTE AGHNISGRGR 120 GRGRGRGRGR SSRHLEKDTA IHYDHFEDDM EIPSHPSDNL HTTVPDNSVA EARVENDNTP 180 VDKAVEPSVR NFDLNVNLDE DGDSTSIPVA ASTDSPVKPQ IDSKHDEYPG WSVAEMEKMA 240 IDPIQLVNMN ETIDDEEDYD EEG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	2e-15	1	55	21	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	119	128	RGRGRGRGRG
2	119	129	RGRGRGRGRGR

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681842	1e-158	LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022.
GenBank	LN713259	1e-158	LN713259.1 Cucumis melo genomic chromosome, chr_5.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008449610.1	1e-149	PREDICTED: dr1-associated corepressor-like isoform X1
TrEMBL	A0A1S3BMF4	1e-148	A0A1S3BMF4_CUCME; dr1-associated corepressor-like isoform X1
STRING	XP_008449610.1	1e-148	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1728	34	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G19490.1	1e-52	NF-YC family protein