PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cla008480 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 184aa MW: 21088.6 Da PI: 9.7179 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 31.8 | 2.8e-10 | 163 | 184 | 1 | 22 |
---SS-EEEEEEE--TT-SS-E CS WRKY 1 ldDgynWrKYGqKevkgsefpr 22 ldDgy+WrKYGqK+vk++ +pr Cla008480 163 LDDGYKWRKYGQKVVKNTLHPR 184 59*****************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.3E-11 | 148 | 184 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.62E-9 | 155 | 184 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 13.115 | 158 | 184 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-6 | 164 | 184 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 184 aa Download sequence Send to blast |
MRSSASEEEI MVSLFQADQE AAAVNAAAIT TNFISFPEAN NNNNNNNVVV QQSLKPFSFS 60 TQHYFCQQQQ QSLFPFFFPS TTAPSNLLSS HNTPSSSSLW DEKERFMRGR NNGIGNYVGD 120 DDNDDDCKPR LRVSTMKMKR IKGRKKVREP RFSFKTMTDV DVLDDGYKWR KYGQKVVKNT 180 LHPR |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681875 | 2e-89 | LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007. | |||
GenBank | LN713262 | 2e-89 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008440122.1 | 4e-66 | PREDICTED: probable WRKY transcription factor 12 isoform X2 | ||||
TrEMBL | A0A1S3B0E1 | 1e-64 | A0A1S3B0E1_CUCME; probable WRKY transcription factor 12 isoform X2 | ||||
STRING | XP_008440122.1 | 2e-65 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4079 | 33 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G39410.1 | 5e-24 | WRKY DNA-binding protein 13 |