PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla008434 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | NAC | ||||||||
Protein Properties | Length: 480aa MW: 53715.7 Da PI: 4.5946 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 155.8 | 1.8e-48 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPt elv++yLkkkv +kkl++ vi+e+diyk+ PwdLp k ++k+++ +wyfF++r++kya+g r nrat+ gyWk+tgkd++v ++e Cla008434 6 LPPGFRFHPTHVELVMFYLKKKVMQKKLPA-GVISELDIYKYAPWDLPeKsCLKSGDLKWYFFCPRERKYASGARMNRATQFGYWKSTGKDRPVNY-NNE 103 79****************************.99**************96357888999*************************************9.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +vg ktL+f++g+apkg +tdWvmheyr+ Cla008434 104 EVGQIKTLTFFRGKAPKGDQTDWVMHEYRI 133 9***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.54E-55 | 4 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.535 | 6 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.1E-24 | 7 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 480 aa Download sequence Send to blast |
MRKRSLPPGF RFHPTHVELV MFYLKKKVMQ KKLPAGVISE LDIYKYAPWD LPEKSCLKSG 60 DLKWYFFCPR ERKYASGARM NRATQFGYWK STGKDRPVNY NNEEVGQIKT LTFFRGKAPK 120 GDQTDWVMHE YRIEEKNLSL EDAAQNGYVL CVIFQKDGPG PRNGAQYGAP FREEDWEEDG 180 LEEVDSLEVD LSSGLSVLPS KEPLNSFAPD TSLTPSNNFG CSSASCISEN LASTSKEVPQ 240 IASGNIASVE IPGNCDIPDD VFTLEEFFPE NGNLNFGVAD GFQFPFLVVL PAYYCSYTLH 300 HQGQELATLA ASKYKDETDT IFNDLEDLGG WSPLNGDGNA CVTGHGVIYS SEPTYPSNNE 360 TMFSSDQRLY LELNDLETPL SSTYQDMQMS NAAYNGPSVT EQPCIPYSSF RVANQNVPPC 420 QYPSLHHSND RIRHPTDLGY PAVDMSASIQ SAWVQENFHP NSNVGCSGNK AYWDHDTNLP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-44 | 5 | 156 | 14 | 168 | Stress-induced transcription factor NAC1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00583 | DAP | Transfer from AT5G64060 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681875 | 1e-118 | LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007. | |||
GenBank | LN713262 | 1e-118 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008441051.1 | 0.0 | PREDICTED: NAC domain-containing protein 82 | ||||
Swissprot | Q9FY82 | 4e-84 | NAC82_ARATH; NAC domain-containing protein 82 | ||||
TrEMBL | A0A1S3B3A9 | 0.0 | A0A1S3B3A9_CUCME; NAC domain-containing protein 82 | ||||
STRING | XP_008441051.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3302 | 34 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64060.1 | 1e-81 | NAC domain containing protein 103 |
Publications ? help Back to Top | |||
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