PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla008228

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

GRAS

Protein Properties

Length: 683aa MW: 77476.9 Da PI: 5.4799

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla008228	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	331.2	1.9e-101	326	680	3	373
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102 +lL++cA+avs+ d++ a++lL++++++++p+gd +qRla+yf+++L++rla ++ ly ++++ets +e l+a+++f +++P+ ++s++ aN++I Cla008228 326 TLLTQCAQAVSNYDQRTANELLNQIRQHSNPSGDGNQRLAHYFAKGLETRLAA-GTPLYLPFASNETS---AAEILKAYQMFIKACPFRRMSYFYANRTI 421 69************************************************9.99999777777777...9************************ PP GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200 l+ +e+ +++Hi+Df+i +GlQWp+L+q L+ Rp+gpp+lRiTg++ p++g +e++e+t +++e++++e+L+++++E Cla008228 422 LKLAEKVTTLHIVDFGILYGLQWPCLIQRLSRRPGGPPKLRITGIELPQPGfrPAERVEQTXXXX--------------XXXLNKWESVRYEDLNLDRDE 507 *******************************************887765666666655432..............224589*********** PP GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac 300 ++V +++++++++de+v +s+rd+vLkl+++++P+++++ + + n++ F +rf eal yys+lfd++ea++pr++ +r+ E+e+lgr+i+nv+ac Cla008228 508 LTIVTCMFRMKNVPDETVVANSPRDRVLKLIRKINPDLFIHEVTNGSFNTPFFNTRFKEALFYYSSLFDMYEATVPRDNPQRHLCEKEILGRDIMNVIAC 607 ************************************************************************************************ PP GRAS 301 egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 eg er+er et+++W+ r ++aGFk+vpl+++ k+++ ++++ + + + ++++ ++++gWk+r + ++S+W Cla008228 608 EGLERVERPETYKQWQVRNTRAGFKQVPLDQDLLKSVEKIVNTEYHQDFVIDQDGSWMLQGWKGRIIDALSCW 680 ***************************************99888*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	53.523	298	661	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.7E-99	326	680	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 683 aa Download sequence Send to blast
MDNLLEDFPN SWNSYHFYPH LSNGLFKVNR ESVDPLQIPA KSQQHQHQLS NNSSSSPSSS 60 SSEGDSPDSH DTSNTMLKYI TEMLMDEGED LKTQPCMLLD CLALQAAEKS FYDVLGQKYP 120 PSPIGNGDSS QDFSCDRAVS NNGEDESESL YGNSSVFAPF QNSLLNQDSF LGMQFIGHFR 180 QGAEEASKFL PVNGRFGTID LDNDSSTSLP SRAVDFSWVG AENDGRSSLE NGLLREKKNR 240 LRDDSDEELR SSKQSANFAD DNSLSDLFDE VLLCRGESRQ SPSCGSDESS ESEANKKSRG 300 RGKRKGKKTT RSRKQENSVG VVDLWTLLTQ CAQAVSNYDQ RTANELLNQI RQHSNPSGDG 360 NQRLAHYFAK GLETRLAAGT PLYLPFASNE TSAAEILKAY QMFIKACPFR RMSYFYANRT 420 ILKLAEKVTT LHIVDFGILY GLQWPCLIQR LSRRPGGPPK LRITGIELPQ PGFRPAERVE 480 QTXXXXXXXL NKWESVRYED LNLDRDELTI VTCMFRMKNV PDETVVANSP RDRVLKLIRK 540 INPDLFIHEV TNGSFNTPFF NTRFKEALFY YSSLFDMYEA TVPRDNPQRH LCEKEILGRD 600 IMNVIACEGL ERVERPETYK QWQVRNTRAG FKQVPLDQDL LKSVEKIVNT EYHQDFVIDQ 660 DGSWMLQGWK GRIIDALSCW VVA

Sequence ? help Back to Top

Protein Sequence Length: 683 aa Download sequence Send to blast

MDNLLEDFPN SWNSYHFYPH LSNGLFKVNR ESVDPLQIPA KSQQHQHQLS NNSSSSPSSS  60
SSEGDSPDSH DTSNTMLKYI TEMLMDEGED LKTQPCMLLD CLALQAAEKS FYDVLGQKYP  120
PSPIGNGDSS QDFSCDRAVS NNGEDESESL YGNSSVFAPF QNSLLNQDSF LGMQFIGHFR  180
QGAEEASKFL PVNGRFGTID LDNDSSTSLP SRAVDFSWVG AENDGRSSLE NGLLREKKNR  240
LRDDSDEELR SSKQSANFAD DNSLSDLFDE VLLCRGESRQ SPSCGSDESS ESEANKKSRG  300
RGKRKGKKTT RSRKQENSVG VVDLWTLLTQ CAQAVSNYDQ RTANELLNQI RQHSNPSGDG  360
NQRLAHYFAK GLETRLAAGT PLYLPFASNE TSAAEILKAY QMFIKACPFR RMSYFYANRT  420
ILKLAEKVTT LHIVDFGILY GLQWPCLIQR LSRRPGGPPK LRITGIELPQ PGFRPAERVE  480
QTXXXXXXXL NKWESVRYED LNLDRDELTI VTCMFRMKNV PDETVVANSP RDRVLKLIRK  540
INPDLFIHEV TNGSFNTPFF NTRFKEALFY YSSLFDMYEA TVPRDNPQRH LCEKEILGRD  600
IMNVIACEGL ERVERPETYK QWQVRNTRAG FKQVPLDQDL LKSVEKIVNT EYHQDFVIDQ  660
DGSWMLQGWK GRIIDALSCW VVA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-39	328	680	8	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681926	0.0	LN681926.1 Cucumis melo genomic scaffold, anchoredscaffold00044.
GenBank	LN713266	0.0	LN713266.1 Cucumis melo genomic chromosome, chr_12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008457465.1	0.0	PREDICTED: scarecrow-like protein 14
TrEMBL	A0A1S3C6V5	0.0	A0A1S3C6V5_CUCME; scarecrow-like protein 14
STRING	XP_008457465.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-160	GRAS family protein