PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla008002
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 314aa    MW: 35118.9 Da    PI: 4.2711
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla008002genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.5e-19118168155
        AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                s+y+GVr++k +g+W+AeIrd +     + +r++lg++ taeeA +a++  r+++e+
  Cla008002 118 SQYRGVRQRK-WGKWAAEIRDpF-----KgARIWLGTYNTAEEASQAYESKRLEFEN 168
                78*******9.**********55.....45************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.7E-17118171IPR016177DNA-binding domain
PfamPF008472.6E-12118168IPR001471AP2/ERF domain
CDDcd000184.66E-24118173No hitNo description
Gene3DG3DSA:3.30.730.107.5E-23119172IPR001471AP2/ERF domain
PROSITE profilePS5103219.836119179IPR001471AP2/ERF domain
SMARTSM003804.2E-19119185IPR001471AP2/ERF domain
PRINTSPR003672.4E-10120131IPR001471AP2/ERF domain
PRINTSPR003672.4E-10142158IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MPEPRVLQLT NHKSFGKKSK SRPEEMKMTR KIRVICNDPD ATDSSSSEDE SEIETKSLKL  60
KRIVREIHLP LFPSHSKSMD VTTSTQSSSQ DSNNGGKNPE LKKRVLGTKT LSTRRSASQY  120
RGVRQRKWGK WAAEIRDPFK GARIWLGTYN TAEEASQAYE SKRLEFENAM AATPKSNIII  180
SSSSSSSEEN EEESDSVVSQ TSPAAVVEME TSSSVLIKED EEEAIDTNLI NELQMPDLGF  240
VDEALEINLG LPELDPFFMD DIGQFLDDFS AMDDIQIYGF DDDVPSCLPD CDFNDFGNDD  300
ISCWVDEALN VPCS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-15119171255ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818170.0LN681817.1 Cucumis melo genomic scaffold, anchoredscaffold00015.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004140859.10.0PREDICTED: ethylene-responsive transcription factor ERF118
TrEMBLA0A0A0K8800.0A0A0A0K880_CUCSA; Uncharacterized protein
STRINGXP_004140859.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26903472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.21e-36ERF family protein