PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla007979

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

G2-like

Protein Properties

Length: 370aa MW: 39923.1 Da PI: 6.5132

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla007979	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.1	1.7e-32	208	263	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rF++a++qLGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ Cla007979 208 KQRRCWSPELHRRFLHALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 263 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.9E-29	205	266	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.05	205	265	IPR017930	Myb domain
SuperFamily	SSF46689	1.56E-18	206	266	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.8E-27	208	263	IPR006447	Myb domain, plants
Pfam	PF00249	1.5E-7	210	261	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence Send to blast
MVYSDKMQEI ASKMGFTLSD FADTLEQERR KVLMFQRELP LCLQLVSHAI DCCRQQLSET 60 TTENRQSECS EQTSSDMGPV LEEFIPINRN GVSDFEQTEK NKNNDDSDLN NLNLAPSDWL 120 RSAQLWNQTS DPPPLNQDQA ENTPVVDVNR NGGAFRPFQK EKTGSAGGGG GASSSSAPAP 180 AAETSSTTET GSGGSSRREE KEAQNQRKQR RCWSPELHRR FLHALQQLGG SHVATPKQIR 240 ELMKVDGLTN DEVKSHLQKY RLHTRRPSPT IHNNESGHAP QFLVVGGIWV PAAEYAAMST 300 TTSSGEAVSA ATTNGIYAPV AAAAAPHPLP STVQKPKPKI PSSAAVAAAE SNSPTTSSST 360 HTSSVSPAAS

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence Send to blast

MVYSDKMQEI ASKMGFTLSD FADTLEQERR KVLMFQRELP LCLQLVSHAI DCCRQQLSET  60
TTENRQSECS EQTSSDMGPV LEEFIPINRN GVSDFEQTEK NKNNDDSDLN NLNLAPSDWL  120
RSAQLWNQTS DPPPLNQDQA ENTPVVDVNR NGGAFRPFQK EKTGSAGGGG GASSSSAPAP  180
AAETSSTTET GSGGSSRREE KEAQNQRKQR RCWSPELHRR FLHALQQLGG SHVATPKQIR  240
ELMKVDGLTN DEVKSHLQKY RLHTRRPSPT IHNNESGHAP QFLVVGGIWV PAAEYAAMST  300
TTSSGEAVSA ATTNGIYAPV AAAAAPHPLP STVQKPKPKI PSSAAVAAAE SNSPTTSSST  360
HTSSVSPAAS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-13	208	261	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-13	208	261	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-13	208	261	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-13	208	261	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-13	208	261	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-13	208	261	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-13	208	261	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-13	208	261	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-13	208	261	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-13	208	261	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-13	208	261	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-13	208	261	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250\|UniProtKB:Q9FX67}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681817	6e-91	LN681817.1 Cucumis melo genomic scaffold, anchoredscaffold00015.
GenBank	LN713257	6e-91	LN713257.1 Cucumis melo genomic chromosome, chr_3.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008445641.1	0.0	PREDICTED: probable transcription factor GLK2
Swissprot	Q9FPE8	4e-92	HHO3_ARATH; Transcription factor HHO3
TrEMBL	A0A1S3BDW6	0.0	A0A1S3BDW6_CUCME; probable transcription factor GLK2
STRING	XP_008445641.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3918	33	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25550.1	9e-84	G2-like family protein

Publications ? help Back to Top
Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis. Plant Cell Physiol., 2016. 57(6): p. 1142-52 [PMID:27016098]