PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla007853

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

NAC

Protein Properties

Length: 297aa MW: 33654.1 Da PI: 5.3722

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla007853	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	121.4	8.2e-38	8	140	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekew....y....fFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdeelv +yL++k++++++ + +ike+d+yk++Pw+Lp+ + +ekew ++ ++ra+ +gyWkatg dk++ Cla007853 8 LPPGFRFHPTDEELVLHYLCRKCSSQPIAV-PIIKEIDLYKYDPWHLPELAVCGEKEWapgpTtppgPXXXXXXXXPHAPPPTRAAGTGYWKATGADKPI 106 79************************99.88************755567889944331222234444455557779999************* PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++ g+kk Lvfy g+ap+g+kt+W+mheyrl Cla007853 107 GR--PKTLGIKKALVFYAGKAPRGVKTNWIMHEYRL 140 98..778*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.29E-46	4	167	IPR003441	NAC domain
PROSITE profile	PS51005	48.116	8	167	IPR003441	NAC domain
Pfam	PF02365	1.0E-20	9	140	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MTVAGIELPP GFRFHPTDEE LVLHYLCRKC SSQPIAVPII KEIDLYKYDP WHLPELAVCG 60 EKEWAPGPTT PPGPXXXXXX XXPHAPPPTR AAGTGYWKAT GADKPIGRPK TLGIKKALVF 120 YAGKAPRGVK TNWIMHEYRL ANVDRSAANK TNNLRLDDWV LCRIYNKKGC IEKHYQSTDD 180 KAAEFPDFED EKPNITNNMV QLPIQNHLQM DTSDSIPRMH TDSSSGSDPV TSPELTWDKE 240 VQSQPKWGEA ADLDFFEFNY MDSFSMPEDD PFGGQVQVQM DHLSPLQDMF SYLQRQI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	6e-64	4	173	11	174	Stress-induced transcription factor NAC1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF173162	1e-180	EF173162.1 Cucumis melo NAC transcription factor (ATAF) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001284423.1	0.0	NAC domain-containing protein 2
Swissprot	Q39013	1e-102	NAC2_ARATH; NAC domain-containing protein 2
TrEMBL	B3SGE8	0.0	B3SGE8_CUCME; NAC domain-containing protein 2
STRING	XP_008460821.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1258	34	108

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01720.1	1e-103	NAC family protein

Publications ? help Back to Top
Florentin A,Damri M,Grafi G Stress induces plant somatic cells to acquire some features of stem cells accompanied by selective chromatin reorganization. Dev. Dyn., 2013. 242(10): p. 1121-33 [PMID:23798027] Jensen MK, et al. ATAF1 transcription factor directly regulates abscisic acid biosynthetic gene NCED3 in Arabidopsis thaliana. FEBS Open Bio, 2013. 3: p. 321-7 [PMID:23951554] Wang YX Characterization of a novel Medicago sativa NAC transcription factor gene involved in response to drought stress. Mol. Biol. Rep., 2013. 40(11): p. 6451-8 [PMID:24057250] Yang X, et al. Overexpression of a Miscanthus lutarioriparius NAC gene MlNAC5 confers enhanced drought and cold tolerance in Arabidopsis. Plant Cell Rep., 2015. 34(6): p. 943-58 [PMID:25666276] Du Q,Wang H The role of HD-ZIP III transcription factors and miR165/166 in vascular development and secondary cell wall formation. Plant Signal Behav, 2015. 10(10): p. e1078955 [PMID:26340415] Takasaki H, et al. SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence. Plant J., 2015. 84(6): p. 1114-23 [PMID:26518251] Liu Y,Sun J,Wu Y Arabidopsis ATAF1 enhances the tolerance to salt stress and ABA in transgenic rice. J. Plant Res., 2016. 129(5): p. 955-962 [PMID:27216423] Ghandchi FP,Caetano-Anolles G,Clough SJ,Ort DR Investigating the Control of Chlorophyll Degradation by Genomic Correlation Mining. PLoS ONE, 2016. 11(9): p. e0162327 [PMID:27618630] Zhao J,Missihoun TD,Bartels D The ATAF1 transcription factor is a key regulator of aldehyde dehydrogenase 7B4 (ALDH7B4) gene expression in Arabidopsis thaliana. Planta, 2018. 248(4): p. 1017-1027 [PMID:30027414]