PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla007765
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 275aa    MW: 29966.8 Da    PI: 6.8045
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla007765genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.91.6e-20134184256
        AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                +y+GVr+++ +g+W+AeIrd +     r  r++lg+f+tae Aa+a+++a+++++g+
  Cla007765 134 KYRGVRQRP-WGKWAAEIRDpF-----RaVRVWLGTFDTAEAAAAAYDEAALRFRGN 184
                8********.**********66.....68*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.6E-32133192IPR001471AP2/ERF domain
PfamPF008471.6E-13134183IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-22134192IPR016177DNA-binding domain
CDDcd000181.78E-20134193No hitNo description
PROSITE profilePS5103225.04134191IPR001471AP2/ERF domain
SMARTSM003807.2E-35134197IPR001471AP2/ERF domain
PRINTSPR003672.0E-11135146IPR001471AP2/ERF domain
PRINTSPR003672.0E-11157173IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MCIIIVFPKV ANSSRDFYSD QNQWLLPSTT FSGLNRDEET SVIVSALTHV VAGEVSPGGG  60
SGGIGSGSST PSSAGSSSYN SHKRGRQDHD EDQHSTASHY SPAFNEDGRN VVGIYEYERE  120
TRRIIRKEEG GRRKYRGVRQ RPWGKWAAEI RDPFRAVRVW LGTFDTAEAA AAAYDEAALR  180
FRGNKAKLNF PENVRLRPSQ PPATANQYAV VSESSVNLFD QMPMTSSMTS PPSSAAGLAS  240
PSSVYGRQWS GGHDGDGAVS VPQWTPEVNE YSSPE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-22133194466ATERF1
3gcc_A8e-22133194466ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008457918.17e-95PREDICTED: ethylene-responsive transcription factor ERF110-like
TrEMBLA0A1S3C6M02e-93A0A1S3C6M0_CUCME; ethylene-responsive transcription factor ERF110-like
STRINGXP_008457918.13e-94(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2457533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.11e-22ethylene response factor 110