PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla007745
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 400aa    MW: 45227.4 Da    PI: 5.6695
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla007745genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.53.9e-19202252256
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                 y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  Cla007745 202 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 252
                59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.17E-34201260No hitNo description
PROSITE profilePS5103222.998202259IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-23202261IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.2E-32202260IPR001471AP2/ERF domain
SMARTSM003804.6E-39202265IPR001471AP2/ERF domain
PfamPF008472.2E-12203252IPR001471AP2/ERF domain
PRINTSPR003676.5E-11203214IPR001471AP2/ERF domain
PRINTSPR003676.5E-11225241IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:2000070Biological Processregulation of response to water deprivation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MAEDKKTGKL KMVIDEKTQK FQEKKIEKGK DVSAVSLERQ QWKPVLDDAF LSRRPLKKIC  60
SSDFHNPFLL HSPVSLSPTS SKIQFPFDFE TSQQSTTTTT TTYQFNSQHP ISSSSSSSSP  120
FTTLGSPEQQ MISFSSNQQQ GFGYPPYFLS GDPVASQQRL FKYWSDAFHL SPRGRALMMS  180
RLGPDGGNLF RPPLQPISAT KLYRGVRQRH WGKWVAEIRL PRNRTRLWLG TFDTAEDAAM  240
AYDREAFKLR GENARLNFPD RFLNKGNPKT EPETEHIVPI TEEAHPESVV VLPPPEEEKP  300
DEHLTESGGC GPEPPEMAWG EMEEAWLNAI PASWGPGSSV WDHLDPTNNF VLQSQIPFGS  360
SNQQQMNDFD DYQNKIENSE SASSSSSSAP MKLFLWKDED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-21201261162ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6817920.0LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004136820.10.0PREDICTED: ethylene-responsive transcription factor ERF053
TrEMBLA0A0A0K1S40.0A0A0A0K1S4_CUCSA; Uncharacterized protein
STRINGXP_004168511.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42683258
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.12e-56ERF family protein