PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cla007656 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 545aa MW: 58337.7 Da PI: 6.8452 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.4 | 9.2e-31 | 306 | 364 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++++++tYeg+Hnh+ Cla007656 306 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDKTILITTYEGNHNHP 364 7***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101447 | 2.01E-6 | 40 | 46 | No hit | No description |
Gene3D | G3DSA:2.20.25.80 | 8.0E-34 | 290 | 366 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.63E-28 | 298 | 366 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.838 | 300 | 366 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.5E-37 | 305 | 365 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.7E-27 | 307 | 364 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 545 aa Download sequence Send to blast |
MDAAAPSPSP PLPTPTPLQF PVNLNSTLPD PNYSPPPPPP PPPPPPPPPP PSSSHRPFFD 60 EMNFFPADDK SRVLLSASHS NLTPTKLDFN VNTGLNLLTT NSCSDQSMVD DGVSPNPEEK 120 RIKNERAVLQ AELERINSEN LRLKDMLNQV TSNYQTLQMQ FNTLIQTQKT GDAGDPIEEN 180 AGSGGGNNNN NNNNNHNNIG NKLVPRQFMD LGLATNMEND EPSMSSSEGR SGDRSRSPGT 240 TGEVASSKRH SPDQSSNWGS NNNNSNNNNK VPKFSSSSGK DVDQTEATMR KARVSVRARS 300 EAPMITDGCQ WRKYGQKMAK GNPCPRAYYR CTMAAGCPVR KQVQRCAEDK TILITTYEGN 360 HNHPLPPAAM AMASTTSSAA RMLLSGSMSS ADGLMNSNFL ARTLLPCSSS MATISASAPF 420 PTVTLDLTQN PNPLFQRPAA GHFPIPFAAG PPQSFPQIFG HALYNQSKFS GLQMSKDIEA 480 PPPPPPQNPL ADTLSAAGVA IASDPNFIAA LATAMTSLIG GSHHQNENGN GSSNVDNNTN 540 SNSQQ |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 3e-21 | 292 | 368 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}. | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681792 | 0.0 | LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034. | |||
GenBank | LN713255 | 0.0 | LN713255.1 Cucumis melo genomic chromosome, chr_1. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011658698.1 | 0.0 | PREDICTED: probable WRKY transcription factor 31 | ||||
Swissprot | Q9C519 | 1e-133 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
Swissprot | Q9XEC3 | 1e-133 | WRK42_ARATH; WRKY transcription factor 42 | ||||
TrEMBL | A0A0A0K3J4 | 0.0 | A0A0A0K3J4_CUCSA; Uncharacterized protein | ||||
STRING | XP_004144595.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF866 | 34 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G62300.1 | 1e-108 | WRKY family protein |