PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla007113
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family TCP
Protein Properties Length: 391aa    MW: 43810.3 Da    PI: 9.3686
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla007113genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP142.43.5e-441022572137
        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............ssssaseceaesssssasnsssg 88 
                +gkkdrh ki+T++g+RdRRvRls+++a++fFdLqd+LG+dk+skt+eWL+ ++k+ai el +               s +as++  e+++++++n+++g
  Cla007113 102 TGKKDRHTKIYTAQGLRDRRVRLSIDIARKFFDLQDMLGYDKASKTLEWLFSKSKKAIRELSRAkyenvavhggdkkMSWAASDV--EEEVEEDDNDKKG 199
                79**************************************************************999999887755433333344..4444444444444 PP

        TCP  89 ........kaaksaakskksqksaasaln.lakesrakarararertrekmriknkln 137
                         +  ++ k++++ +++ ++ n lakesrakarararert ek++  +++n
  Cla007113 200 wglkmksmVSIDEEIKEQENVSNKVEVFNlLAKESRAKARARARERTMEKKKVGENNN 257
                778998875555555666666666666661566*****************99887766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.5E-42102251IPR005333Transcription factor, TCP
PROSITE profilePS5136935.596104162IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137012.397232249IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MGSSGYNNLN PFPWLPPPST TSYNLPLSLS SLLNSDPLPN STPTFNFHQP HQDPLSFLAP  60
HFPISHFSAL TPPEAAVINF AVAGNNIQAL GGIVPSAPGV GTGKKDRHTK IYTAQGLRDR  120
RVRLSIDIAR KFFDLQDMLG YDKASKTLEW LFSKSKKAIR ELSRAKYENV AVHGGDKKMS  180
WAASDVEEEV EEDDNDKKGW GLKMKSMVSI DEEIKEQENV SNKVEVFNLL AKESRAKARA  240
RARERTMEKK KVGENNNDDG KIYRHQKSGT KEVSDNWISK NMNQSTETSN MSMEESSFMN  300
KRRVICAKKF IDDNDSDNVG VKPCRDDNAG IFQWKILDQM KGSSKGHLQE PSMIKISGSS  360
QRNLLISVDG IPINLTQNWD TNSNPNYPFA K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A6e-14109162154Putative transcription factor PCF6
5zkt_B6e-14109162154Putative transcription factor PCF6
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011651364.11e-166PREDICTED: transcription factor CYCLOIDEA
TrEMBLA0A1S3CGD11e-161A0A1S3CGD1_CUCME; transcription factor TCP1
STRINGXP_008461599.11e-159(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.26e-28TCP family protein