PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla007095

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

LBD

Protein Properties

Length: 306aa MW: 33073.6 Da PI: 8.5623

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla007095	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	100.5	1.6e-31	4	107	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +C++C+vlr++C+++C ++p++ p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+q+++e++ Cla007095 4 SCNGCRVLRKGCSENCSIRPCLqwiktPESQANATVFLAKFYGRAGLMNLINAGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAV 103 6*************************************************************************************************99 PP DUF260 96 llke 99 l ++ Cla007095 104 LKGA 107 8766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038155	1.7E-94	1	301	IPR017414	LOB domain-containing protein 10/36/41
PROSITE profile	PS50891	17.134	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.0E-25	4	102	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSENCS IRPCLQWIKT PESQANATVF LAKFYGRAGL MNLINAGPDH 60 LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV EAVLKGAPIT PINSEAAATG 120 DGPPLKAYDI RHVSKDENSV ASNDGGANRR VKTRCRFKRS AVKAKGSKGI DSTVDESTRR 180 FCSTELNRSS SGESSLSHQS DSRHLENESK ETESMISVET AEVSPPPMPS VLFRSESSSV 240 LKSTGQDGGV VAIPQSELAL ELTLGMEPAL RAQHVIPMKK RKIEADVGFR PNNDTCNTVL 300 GLDFSA

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681856	0.0	LN681856.1 Cucumis melo genomic scaffold, anchoredscaffold00062.
GenBank	LN713260	0.0	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022983660.1	0.0	LOB domain-containing protein 41
Swissprot	Q9M886	1e-103	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A0A0LCG6	0.0	A0A0A0LCG6_CUCSA; Uncharacterized protein
STRING	XP_008461588.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1546	34	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	1e-101	LOB domain-containing protein 41