PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla006991
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ARR-B
Protein Properties Length: 493aa    MW: 55061.3 Da    PI: 8.9491
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla006991genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like729.1e-23208261155
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                kp+++Wt  L  rF++av+ + G e+A+Pk+ile+m+v+gLt+e+v+SHLQkYR+
  Cla006991 208 KPKVVWTDFLQYRFLQAVHYI-GLERAVPKKILEVMNVPGLTRENVASHLQKYRI 261
                79*******************.********************************6 PP
2Response_reg74.63.8e-25231311109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   v++vdD+ + + +l ++l+  +y +va++dd+  al +l++ +  +Dli++ + m++mdG+el+k+ + e  klp+i++++ + e+ + +a++ G+ 
     Cla006991  23 VMVVDDDATSLAVLSNLLKTLNY-QVASFDDPIHALYTLRAGKqsFDLIVTALYMSKMDGIELTKRVNGEF-KLPVIMISTDDRESVVYRAIQEGVV 117
                   89*********************.***************877777**********************9999.************************* PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                    +l+Kpf++++l++
     Cla006991 118 LYLVKPFSQDDLRN 131
                   ***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23008.0E-3021166No hitNo description
SuperFamilySSF521723.7E-2821147IPR011006CheY-like superfamily
SMARTSM004489.3E-2721133IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011036.84122137IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.2E-2123132IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.74E-2624137No hitNo description
SuperFamilySSF466893.05E-17206265IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-24206265IPR009057Homeodomain-like
TIGRFAMsTIGR015573.0E-23208261IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MDCQQQVEAS NNIIAFPPVT IHVMVVDDDA TSLAVLSNLL KTLNYQVASF DDPIHALYTL  60
RAGKQSFDLI VTALYMSKMD GIELTKRVNG EFKLPVIMIS TDDRESVVYR AIQEGVVLYL  120
VKPFSQDDLR NIWQFAITTK SRSESNPSLI IEETRSNGTV EFRAFEAHSV SASNEVISER  180
KKKRSSKGKG GNQEKENGKK EVNSAKKKPK VVWTDFLQYR FLQAVHYIGL ERAVPKKILE  240
VMNVPGLTRE NVASHLQKYR IFLRKVSERC MISSNKTAEE MLWSKFLSQH ASFMLQKIQQ  300
KRNSHINSSQ NLNIPPFPIH QSCSLNPNNG DRRSKCKPSS FEAYLSPYYG LGHPASFMTN  360
FVGCPLPIMN QNYNAQAFNF SGPQFPNLDL LEDHSNLGCS SFPGNNDYNN GFSVGNGGGL  420
SMAPMGISSN GFDGNGQFGQ YGIGFGGDHN SYNWGLMCKN NGVNFGDDSQ ITVRHSSHAL  480
DNKVCKKSQT FPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-22204267164ARR10-B
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819250.0LN681925.1 Cucumis melo genomic scaffold, anchoredscaffold00052.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022964427.10.0two-component response regulator ORR22-like
TrEMBLA0A1S4E2N11e-151A0A1S4E2N1_CUCME; uncharacterized protein LOC103499086
STRINGXP_008460201.11e-152(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101422534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.18e-53response regulator 2