PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla006906

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

NAC

Protein Properties

Length: 296aa MW: 34179.5 Da PI: 6.5159

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla006906	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	147.5	7e-46	14	144	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkya..tgkrknratksgyWkatgkdkevlsk..kg 97 pGfrFhPt+eel+ +yLk+ v gk+ + ++vi ++iy+++PwdLp +k++e+ewyfF++rd+k+ g r+nr+t gyWkatg+d+++ls + Cla006906 14 LPGFRFHPTEEELLEFYLKQMVFGKRRHSFDVIGFLNIYQHDPWDLPDLAKNGEREWYFFVPRDRKHGgcGGGRPNRTTGIGYWKATGSDRRILSLsdPK 113 59**********************9999*************8889999********9955599****************9975556 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 + +gl+ktLvfykgrap+g+ktdWvm+eyrl Cla006906 114 RFIGLRKTLVFYKGRAPRGTKTDWVMNEYRL 144 67*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.32E-53	6	162	IPR003441	NAC domain
PROSITE profile	PS51005	54.201	13	162	IPR003441	NAC domain
Pfam	PF02365	2.3E-24	15	144	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MADTGHHHHQ LGQLPGFRFH PTEEELLEFY LKQMVFGKRR HSFDVIGFLN IYQHDPWDLP 60 DLAKNGEREW YFFVPRDRKH GGCGGGRPNR TTGIGYWKAT GSDRRILSLS DPKRFIGLRK 120 TLVFYKGRAP RGTKTDWVMN EYRLPDNSSL PMDMVLCKIY RKATSLKVLE QRAVEEETKN 180 LQMNNTTIAT PLMGEEQDDD QDSICTQNIQ RLNSCEVVMK KETSYGEEEE EVDSKVADGG 240 SSLSSTTSLQ IPKGFNMLTD LQVPKVNMDW TQDQFWNQFN SPWLLNFTTP SNILNF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-44	10	165	14	168	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-44	10	165	14	168	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-44	10	165	14	168	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-44	10	165	14	168	NO APICAL MERISTEM PROTEIN
3swm_A	2e-44	10	165	17	171	NAC domain-containing protein 19
3swm_B	2e-44	10	165	17	171	NAC domain-containing protein 19
3swm_C	2e-44	10	165	17	171	NAC domain-containing protein 19
3swm_D	2e-44	10	165	17	171	NAC domain-containing protein 19
3swp_A	2e-44	10	165	17	171	NAC domain-containing protein 19
3swp_B	2e-44	10	165	17	171	NAC domain-containing protein 19
3swp_C	2e-44	10	165	17	171	NAC domain-containing protein 19
3swp_D	2e-44	10	165	17	171	NAC domain-containing protein 19
4dul_A	2e-44	10	165	14	168	NAC domain-containing protein 19
4dul_B	2e-44	10	165	14	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681918	1e-107	LN681918.1 Cucumis melo genomic scaffold, anchoredscaffold00020.
GenBank	LN713265	1e-107	LN713265.1 Cucumis melo genomic chromosome, chr_11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011656937.1	1e-179	PREDICTED: NAC domain-containing protein 67-like
Swissprot	Q10S65	2e-90	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	A0A0A0KAG5	1e-178	A0A0A0KAG5_CUCSA; Uncharacterized protein
STRING	XP_008448321.1	1e-178	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6214	32	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	1e-97	NAC domain containing protein 36

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]