PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla006880
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family CO-like
Protein Properties Length: 404aa    MW: 44060.1 Da    PI: 5.0886
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla006880genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.68e-063477541
   zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg........Htvvp 41
                C+++++++ +  C d +  lC++C  + H g        H++++
  Cla006880 34 LCERCHSQPSTVRCIDERLSLCQNCDWTVH-GtstlasssHKRQT 77
               7**************************99*.54788888888765 PP
2CCT60.74.9e-21347390144
        CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                R+ a+lRYkeK+ktRkFeK++rY++RKa+A+ R RvKGrFvk+ 
  Cla006880 347 RNSAVLRYKEKKKTRKFEKTVRYATRKARADVRRRVKGRFVKAG 390
                999**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000216.91E-4234No hitNo description
PROSITE profilePS501198.563078IPR000315B-box-type zinc finger
CDDcd000218.92E-53478No hitNo description
PfamPF062036.2E-16347389IPR010402CCT domain
PROSITE profilePS5101715.13347389IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MVYCRSDAAC LCLSCDRNVH SANALSRRHT RTLLCERCHS QPSTVRCIDE RLSLCQNCDW  60
TVHGTSTLAS SSHKRQTINC YSGCPSAAEL SSIWSFVLDV PSVNDACEKE LGLMSIAETD  120
LMGTWSLSEN NAGQRMPGST EASDVCSREK SNALVGSSSL IDFGSRPHTS DQPVEFANVA  180
LPKFCCPGTK VAEFCGEDDD LYKEFDMDEM DLNLENYEEL FSMSLNHSEE FFENGGIDSF  240
FEAKGLSFED SVCHSAVAAE GSSIGVVKPM QPACSNGASA DSVMSAKTEP VLCFNSRQAQ  300
SGVSFSGLTG ESSAGDHQDC GASSMLLMGE PPWCAPGAES SFPSSDRNSA VLRYKEKKKT  360
RKFEKTVRYA TRKARADVRR RVKGRFVKAG EAYDYDPLNQ ARSC
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819170.0LN681917.1 Cucumis melo genomic scaffold, anchoredscaffold00085.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004139988.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like isoform X2
SwissprotQ9SSE51e-132COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A0A0KCQ60.0A0A0A0KCQ6_CUCSA; Uncharacterized protein
TrEMBLA0A1S3CLA30.0A0A1S3CLA3_CUCME; zinc finger protein CONSTANS-LIKE 9-like isoform X2
STRINGXP_004154511.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43623353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.41e-112CONSTANS-like 9