PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla006802
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family GRF
Protein Properties Length: 334aa    MW: 36724.8 Da    PI: 8.3217
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla006802genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.56.5e-2590134145
        WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+
  Cla006802  90 DPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMHRGRNRSRKPVES 134
                79****************************************986 PP
2QLQ60.54.6e-212864137
        QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
               s+FT  Q+q+L++Q+l++Ky++a++PvPp+L+++iqk
  Cla006802 28 SPFTVLQWQELEHQALIFKYMMAGLPVPPDLVLPIQK 64
               89*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.5E-112864IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.4E-152963IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.9272964IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.76290134IPR014977WRC domain
PfamPF088793.9E-2191133IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MNNSGGGGED GSRTVAAIAS GMMGMNRSPF TVLQWQELEH QALIFKYMMA GLPVPPDLVL  60
PIQKSFESIS HRFFHHPTMA YCSFYGKKVD PEPGRCRRTD GKKWRCSKDA YPDSKYCERH  120
MHRGRNRSRK PVESQTMTQS SSTVTSLTAT GSSSTGTGSF HGLPLNALSS SQTTTTGTSQ  180
PHYPLDSIPY GIPSKDYRYL QGLRPEAGVH SFFSEASGSS RAVQMDAPID NTWPMMPSRS  240
PSFPASKSTE NSIFQSGYPQ HSFLGGEYAS GETLKQEGQS LQPLFDEWPR TRESWTGLDD  300
ERSNQTSFST TQLSISIPMA SSDLSTTSSK SPHG
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819150.0LN681915.1 Cucumis melo genomic scaffold, anchoredscaffold00070.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023512137.10.0growth-regulating factor 3-like
TrEMBLA0A0A0LN730.0A0A0A0LN73_CUCSA; Uncharacterized protein
TrEMBLA0A1S3CHP30.0A0A1S3CHP3_CUCME; growth-regulating factor 4-like
STRINGXP_004156783.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47812951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.11e-44growth-regulating factor 5