PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla006705
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family Dof
Protein Properties Length: 272aa    MW: 29932.7 Da    PI: 8.2638
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla006705genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.56.9e-392989262
     zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
               ++++l+cprC+s+ntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvP+Ggg+rkn+++s
  Cla006705 29 PKDQLNCPRCKSNNTKFCYYNNYSLTQPRYFCKSCRRYWTEGGSLRNVPIGGGSRKNRSKS 89
               57899****************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577838.5E-52370No hitNo description
ProDomPD0074783.0E-242386IPR003851Zinc finger, Dof-type
PfamPF027011.5E-323287IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.7143387IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103571IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009639Biological Processresponse to red or far red light
GO:0009845Biological Processseed germination
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MEDINPNSST RSSPSSSSIL EIKKSTKPPK DQLNCPRCKS NNTKFCYYNN YSLTQPRYFC  60
KSCRRYWTEG GSLRNVPIGG GSRKNRSKST TTITIMSNSS APSSSSSSSS DHFNNNNPKL  120
PNYPASQFSS QNPVGKDLNL AFPCAMSHYA DHQLSKVENV NNSNYNCGIG FRGLSSFIPN  180
LMPNSNNNNT NLGINSNGQY PTGFSLPDLD EFKPSLGINS VDGFGDGRNL LPFQELNQQS  240
AAPNEGDHQN ERQQGNNIST GYWSGMLEDE SF
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819253e-61LN681925.1 Cucumis melo genomic scaffold, anchoredscaffold00052.
GenBankLN7132653e-61LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023005072.15e-83dof zinc finger protein DOF3.7-like
TrEMBLA0A1S3CC555e-74A0A1S3CC55_CUCME; dof zinc finger protein DOF3.7
TrEMBLE5GCN05e-74E5GCN0_CUCME; F-box family protein
STRINGXP_008459765.18e-75(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2454833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61850.34e-37Dof family protein