PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla006697 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | NAC | ||||||||
Protein Properties | Length: 400aa MW: 44595.8 Da PI: 6.4372 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 166 | 1.3e-51 | 14 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 +ppGfrFhPt+eel+++yL+kkv+ +k++l +vi++vd++k+ePwd+++k+k +++wyfFs++dkky+tg+r+nrat++g+Wkatg+dk ++s + Cla006697 14 VPPGFRFHPTEEELLQYYLRKKVSFDKIDL-DVIRDVDLNKLEPWDIQEKCKIgttPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIYS-NC 111 69****************************.9***************964444222455**************************************.88 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 + +g++ktLvfykgrap+g+k+dW+mheyrl Cla006697 112 RRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 142 89***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-57 | 7 | 178 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.074 | 14 | 178 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.1E-27 | 15 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009809 | Biological Process | lignin biosynthetic process | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0009901 | Biological Process | anther dehiscence | ||||
GO:0010047 | Biological Process | fruit dehiscence | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 400 aa Download sequence Send to blast |
MPKMSISVNG QSQVPPGFRF HPTEEELLQY YLRKKVSFDK IDLDVIRDVD LNKLEPWDIQ 60 EKCKIGTTPQ NDWYFFSHKD KKYPTGTRTN RATAAGFWKA TGRDKVIYSN CRRIGMRKTL 120 VFYKGRAPHG QKSDWIMHEY RLDENSTSES NNMMKATSVV IGEGGQEEGW VVCRIFKKKN 180 HHKTLDSPMS TTTTETTSSL YLDSCNDGAL EQIIHYMGGT CKEIIEEDQE EDDTVGVGSG 240 RLLRPIATSS VVIGGGGSYL DGRFSKLPNL ESPNSTSTHN CYQPINNHLG PTDPMIISGY 300 QPESSLSAAT PPHNWAAFDR LVASQLNGQI EVPNMIYYSD QLPTPTLRGT TSFSSKSSSS 360 SYNAAAVAAA QDYNNVDTEL WSFARLSSTD PLCHVSDTPI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-47 | 8 | 180 | 9 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00321 | DAP | Transfer from AT2G46770 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008459751.1 | 0.0 | PREDICTED: NAC domain-containing protein 43 | ||||
Swissprot | Q84WP6 | 1e-134 | NAC43_ARATH; NAC domain-containing protein 43 | ||||
TrEMBL | A0A1S3CC46 | 0.0 | A0A1S3CC46_CUCME; NAC domain-containing protein 43 | ||||
STRING | XP_008459751.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3031 | 33 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46770.1 | 1e-116 | NAC family protein |