PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla006600
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 324aa    MW: 34649.3 Da    PI: 9.5115
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla006600genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.85.4e-1872121255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                +y+GVr+++ +g+WvAeIr+p++   r+r +lg+f tae+Aa+a+++a+  l+g
  Cla006600  72 RYRGVRQRS-WGKWVAEIREPRK---RTRKWLGTFSTAEDAARAYDRAAIILYG 121
                59****999.**********954...5**********************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.0E-1272117IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-2072129IPR016177DNA-binding domain
PROSITE profilePS5103222.41872129IPR001471AP2/ERF domain
SMARTSM003807.8E-3972135IPR001471AP2/ERF domain
CDDcd000182.31E-2072129No hitNo description
Gene3DG3DSA:3.30.730.101.1E-2972129IPR001471AP2/ERF domain
PRINTSPR003671.6E-107384IPR001471AP2/ERF domain
PRINTSPR003671.6E-1095111IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006970Biological Processresponse to osmotic stress
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009744Biological Processresponse to sucrose
GO:0009749Biological Processresponse to glucose
GO:0010119Biological Processregulation of stomatal movement
GO:0010353Biological Processresponse to trehalose
GO:0010449Biological Processroot meristem growth
GO:0010896Biological Processregulation of triglyceride catabolic process
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0032880Biological Processregulation of protein localization
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048316Biological Processseed development
GO:0048527Biological Processlateral root development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MEPDHSPSSS LPHPPQDPSS SSSSPLLLQS PNPSSSPSSP NPSDSSSNIP NNNTNGGRKR  60
KGKGGPDNNK FRYRGVRQRS WGKWVAEIRE PRKRTRKWLG TFSTAEDAAR AYDRAAIILY  120
GSRAQLNLQS TSPNSSSNSS SSSHSSSSSR SSSSSSSLRP LLPRPASASA STFSFSSMAS  180
SLPVMPSPQS LPYTLYPPPQ GFSLIAPNLL HQYPPQLTQH PHGFSPPNHE IITATTTTTV  240
PTNSTPPIST LPTPSSPTTS YSQNPNPLLL AASPPTPLPP LPSDLILGPI GPASPALGWP  300
SLEINDEDYL PCLWDYADPF FFDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-1873128359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004138561.13e-93PREDICTED: ethylene-responsive transcription factor ABI4
RefseqXP_023545386.14e-93ethylene-responsive transcription factor ABI4
TrEMBLA0A0A0KBN18e-92A0A0A0KBN1_CUCSA; Uncharacterized protein
STRINGXP_004160749.11e-92(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88472940
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40220.13e-22ERF family protein