PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla006599
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 250aa    MW: 27876.7 Da    PI: 9.091
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla006599genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH421.7e-1371117354
                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                ++h+++E+rRRdriN  +++Lr+l+Pk+      K++Ka+ L  A++ +k+L
  Cla006599  71 KSHSQAEKRRRDRINAQLATLRKLIPKS-----DKMDKAALLGSAIDQVKDL 117
                79*************************8.....7*************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.46668117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-1369120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-1171117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-1571120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.79E-1071120No hitNo description
SMARTSM003539.9E-1174123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048736.45E-4156207No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MEDNWDCSTK PEGLNWDHCN NNSSHESSLL LPWMINSQFS SSTEFRFDGF PSFSAPAEGI  60
IAEDRAASAS KSHSQAEKRR RDRINAQLAT LRKLIPKSDK MDKAALLGSA IDQVKDLKRK  120
AIEASKNMTV PTDMDEVTID STMVEDNSRN NIAIKVSVSC DDRPELFTEL IQVIKGLKLT  180
TIRADMASVG GRIKSILILC NKDGEKSVCL NTVQQSLKLV LSRMSSSSTA STCRIRSKRQ  240
RFFLPSHYSK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818150.0LN681815.1 Cucumis melo genomic scaffold, anchoredscaffold00008.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022134346.11e-158transcription factor bHLH51-like
TrEMBLA0A0A0KDD11e-155A0A0A0KDD1_CUCSA; Uncharacterized protein
STRINGXP_004160727.11e-156(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57963351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.12e-45bHLH family protein