PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla006594
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family NF-X1
Protein Properties Length: 803aa    MW: 89828.5 Da    PI: 8.5395
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla006594genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X126.61.2e-08236254119
   zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                CG+HkC ++CHeG CppC+
  Cla006594 236 CGRHKCTEICHEGSCPPCR 254
                ******************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578509.71E-569146No hitNo description
PROSITE patternPS01359071137IPR019786Zinc finger, PHD-type, conserved site
CDDcd060082.16E-7172220No hitNo description
SMARTSM004380.072184202IPR000967Zinc finger, NF-X1-type
PfamPF014220.064184201IPR000967Zinc finger, NF-X1-type
CDDcd060081.09E-10226274No hitNo description
SMARTSM004385.2E-5236255IPR000967Zinc finger, NF-X1-type
PfamPF014224.2E-6236254IPR000967Zinc finger, NF-X1-type
CDDcd060084.34E-9279326No hitNo description
SMARTSM004380.0033289308IPR000967Zinc finger, NF-X1-type
PfamPF014220.015289307IPR000967Zinc finger, NF-X1-type
CDDcd060089.67E-9333378No hitNo description
SMARTSM004381.4343363IPR000967Zinc finger, NF-X1-type
PfamPF014220.01343362IPR000967Zinc finger, NF-X1-type
CDDcd060083.20E-9409452No hitNo description
SMARTSM004380.0069414433IPR000967Zinc finger, NF-X1-type
PfamPF014220.0087414432IPR000967Zinc finger, NF-X1-type
SMARTSM0043848471492IPR000967Zinc finger, NF-X1-type
PfamPF014224.3481491IPR000967Zinc finger, NF-X1-type
SMARTSM0043868500545IPR000967Zinc finger, NF-X1-type
PfamPF0142220500509IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0027567585IPR000967Zinc finger, NF-X1-type
PfamPF014220.039567584IPR000967Zinc finger, NF-X1-type
SMARTSM004385.9630651IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 803 aa     Download sequence    Send to blast
MISTHDHRRT ISDSDSNSDD ENGGSESLRH LDLSDSIFKA YFEFTGRSTT TADLSKIQSF  60
LTSSSSGALS CLICLERIRL SDPTWSCSSL CFAVFHLFCI QSWARQASDL AAARAATRSL  120
VSPDKPDEHS VWNCPKCRVE YSKSSIPKKY FCFCGKLENP PGDDPWILPH SCGEVCGRPL  180
KHNCGHHCLL LCHPGPCPSC PKIVQANCYC GSVRDARRCG FKNFSCNNVC SKVLDCGRHK  240
CTEICHEGSC PPCRIQGVFK CQCGKTVEKR ECWDRNFRCE SECNKLLGCG KHSCNKGCHS  300
GECGQCPFKG KRTCPCGKKA YEGMPCDVAV PLCGATCDKM LACGFHRCPE RCHRGPCIGT  360
CRIVVFKSCR CGSLRKEIWH VRGSARECET VDAMLVDAAV VMVTAHPAQR RLRCKNHKCP  420
SPCHRGPCAP CPVMVTISCA CGETHFEVPC GTEMDQKPPK CPKQCPVSPL CNHRLSQKPH  480
KCHYGACPPC RRICEEEYSC GHKCQLRCHG PKPPPKPEFT LKPKKKKVFH PEEPAPGSLC  540
PPCPELVWRP CVGQHIGAER MERKPKCSHS CPLKCHPGDC PPCKVLLKRS CHCGSMVHVF  600
ECVYYISLSP EEQMAVRSCG GPCHRKLPYC THLCPETCHP GDCPSPENCS KKVTVRCGCQ  660
TLKKEWLCKD VQAAYRKMDR DPKDISKTQF GYGLLPCGSD CKSKVQVVES ELTQRKSEVN  720
GVKELDTKKQ VSKRKRRRDS VQQVKQISRL QKFFTASKYI LLIIVVLIAV VSISLYGYKG  780
LLWLNDWMNE AEKQRPRRRY PRI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1732737KRKRRR
2733737RKRRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818150.0LN681815.1 Cucumis melo genomic scaffold, anchoredscaffold00008.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004138563.10.0PREDICTED: NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A0A0K7R10.0A0A0A0K7R1_CUCSA; Uncharacterized protein
STRINGXP_004138563.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102253237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors