PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla006268 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | NAC | ||||||||
Protein Properties | Length: 334aa MW: 39080.6 Da PI: 6.134 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 179 | 1.3e-55 | 7 | 136 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 +ppGfrFhPtdeelv++yL+kk+ ++++el +vik+vd+yk+ePwdL++ ++ + +++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+++s k+ Cla006268 7 VPPGFRFHPTDEELVDYYLRKKICSRRIEL-DVIKDVDLYKIEPWDLQEicSLGTeDQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYS-KH 104 69****************************.9***************954533332566**************************************.88 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrle 129 l+g++ktLvfykgrap+g+k+dW+mheyrle Cla006268 105 DLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136 99****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-61 | 5 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.945 | 7 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-28 | 8 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MNTFLQVPPG FRFHPTDEEL VDYYLRKKIC SRRIELDVIK DVDLYKIEPW DLQEICSLGT 60 EDQNEWYFFS HKDKKYPTGT RTNRATAAGF WKATGRDKAI YSKHDLIGMR KTLVFYKGRA 120 PNGQKSDWIM HEYRLETDEN ATPQEEGWVV CRVFKKRIAT VRRMNEHESP CWYEEPVSSF 180 MPDLDSPNQS SHSNFPHHIS NFPCKKEVDY LPYQQAQVPQ DHHFLHLPLL EGQKLANTFA 240 LDINLQASNF QPSAAKQQNI QQQFSDQNLL FLFDNNNNSN NEQTMDQLTD WRVFDKYVAS 300 QLSQENNNNA SKQEVIAPEN APTSTSTCQI ELWK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 7e-51 | 5 | 157 | 13 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681848 | 0.0 | LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006. | |||
GenBank | LN713260 | 0.0 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008439092.1 | 0.0 | PREDICTED: NAC domain-containing protein 7-like | ||||
Refseq | XP_008439093.1 | 0.0 | PREDICTED: NAC domain-containing protein 7-like | ||||
Swissprot | Q9FWX2 | 1e-128 | NAC7_ARATH; NAC domain-containing protein 7 | ||||
TrEMBL | A0A1S3AXZ4 | 0.0 | A0A1S3AXZ4_CUCME; NAC domain-containing protein 7-like | ||||
STRING | XP_008439092.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1269 | 33 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12260.1 | 1e-114 | NAC 007 |
Publications ? help Back to Top | |||
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