PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla006229
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MIKC_MADS
Protein Properties Length: 142aa    MW: 16478.9 Da    PI: 9.7989
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla006229genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.25.9e-30958150
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
               +rienk nrqvtfskRrng+lKKA ELSvLCd++va+iifss+gkl+e+ 
  Cla006229  9 ERIENKVNRQVTFSKRRNGLLKKACELSVLCDVDVALIIFSSRGKLFEFG 58
               69**********************************************95 PP
2K-box63.39e-2282140969
      K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 
                l+e++     +e++kL++++e+Lqr++R++lGe+Le+L+lkeL++Le+qL+k l++ R++K
  Cla006229  82 LDESDI--QIEEVSKLRAKYESLQRSHRNFLGEELEPLNLKELHNLEKQLDKTLSHARQRK 140
                444433..369*************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.2E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.866161IPR002100Transcription factor, MADS-box
CDDcd002652.23E-41278No hitNo description
SuperFamilySSF554551.83E-33286IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-29323IPR002100Transcription factor, MADS-box
PfamPF003191.1E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-293859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129710.63285142IPR002487Transcription factor, K-box
PfamPF014861.4E-1689140IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MGRGKVVLER IENKVNRQVT FSKRRNGLLK KACELSVLCD VDVALIIFSS RGKLFEFGST  60
DMNKILERYH QRCYSSGSST NLDESDIQIE EVSKLRAKYE SLQRSHRNFL GEELEPLNLK  120
ELHNLEKQLD KTLSHARQRK IV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-25183183MEF2 CHIMERA
6byy_B2e-25183183MEF2 CHIMERA
6byy_C2e-25183183MEF2 CHIMERA
6byy_D2e-25183183MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818487e-73LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132607e-73LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011651126.11e-91PREDICTED: MADS-box transcription factor 6-like
SwissprotQ8LLR12e-60MADS3_VITVI; Agamous-like MADS-box protein MADS3
TrEMBLA0A1S3AY432e-89A0A1S3AY43_CUCME; MADS-box transcription factor 17-like
STRINGXP_004150309.16e-92(Cucumis sativus)
STRINGXP_004167097.16e-92(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132231730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.12e-55AGAMOUS-like 6
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]