PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla006222
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MIKC_MADS
Protein Properties Length: 174aa    MW: 20645.7 Da    PI: 10.175
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla006222genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.36.5e-31959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               krien + rqvtfskRrng+lKKA+ELSvLCdaevaviifs++g+lye++s
  Cla006222  9 KRIENATSRQVTFSKRRNGLLKKAYELSVLCDAEVAVIIFSQKGRLYEFAS 59
               79***********************************************86 PP
2K-box48.24.5e-17851383386
      K-box  33 reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkeke 86 
                + q +llG +L+s+s+ eLq L  qL++sl +iR++K +l++eqi++lq+k  +
  Cla006222  85 QLQLQLLGYGLDSCSHDELQVLDAQLQRSLFQIRARKAQLYKEQIQQLQEKVIN 138
                45679**********************************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.576161IPR002100Transcription factor, MADS-box
SMARTSM004321.0E-41160IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-32323IPR002100Transcription factor, MADS-box
CDDcd002659.77E-44378No hitNo description
SuperFamilySSF554553.79E-33383IPR002100Transcription factor, MADS-box
PfamPF003191.9E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-323859IPR002100Transcription factor, MADS-box
PROSITE profilePS512978.75466174IPR002487Transcription factor, K-box
PfamPF014863.0E-1387136IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MVRGKVEMKR IENATSRQVT FSKRRNGLLK KAYELSVLCD AEVAVIIFSQ KGRLYEFASS  60
EMPRIVERYR KCSRDGKNST RFDRQLQLQL LGYGLDSCSH DELQVLDAQL QRSLFQIRAR  120
KAQLYKEQIQ QLQEKVINSV RNVFFFPSFY DNYYDTFFFQ FRKDSFQKKT GNCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P7e-21183183Myocyte-specific enhancer factor 2B
1tqe_Q7e-21183183Myocyte-specific enhancer factor 2B
1tqe_R7e-21183183Myocyte-specific enhancer factor 2B
1tqe_S7e-21183183Myocyte-specific enhancer factor 2B
6c9l_A7e-21183183Myocyte-specific enhancer factor 2B
6c9l_B7e-21183183Myocyte-specific enhancer factor 2B
6c9l_C7e-21183183Myocyte-specific enhancer factor 2B
6c9l_D7e-21183183Myocyte-specific enhancer factor 2B
6c9l_E7e-21183183Myocyte-specific enhancer factor 2B
6c9l_F7e-21183183Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818484e-78LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132604e-78LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008439149.11e-77PREDICTED: MADS-box protein AGL42-like isoform X2
SwissprotQ9FIS12e-55AGL42_ARATH; MADS-box protein AGL42
TrEMBLA0A1S3AXN73e-76A0A1S3AXN7_CUCME; MADS-box protein AGL42-like isoform X2
STRINGXP_008439148.12e-76(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66630102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.36e-54AGAMOUS-like 42