PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla006210

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

ARR-B

Protein Properties

Length: 885aa MW: 98242.4 Da PI: 8.9721

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla006210	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	78.3	9.8e-25	576	629	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kp++ Wt+ LH+rF++a++ + G +kA+Pk+ile+m+v+gLt+e+v+SHLQkYR+ Cla006210 576 KPKVIWTNSLHNRFLQAIRLI-GLHKAVPKKILEFMNVPGLTRENVASHLQKYRI 629 799*************999.******************************6 PP
2	Response_reg	66.2	1.5e-22	405	511	1	107
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 +l+vdD+ + + ++ +l+ +y +v + +++ eal++l++++ +Dl+++D+ mp+m+Gl+l k+ +e klp+i+++a ++++ +l+ l+ G+ Cla006210 405 ILLVDDDATSLAVVSAMLRLCKY-QVVTLRNPIEALDTLRARKgfFDLVVTDLHMPQMNGLQLQKKVMQEF-KLPVIMMSADEKPSVILKSLEEGVA 499 89*******************.9999*******999999******************9988.9******************** PP EEEESS--HHHH CS Response_reg 96 dflsKpfdpeel 107 + +Kp++ +++ Cla006210 500 FYMVKPISLDDV 511 *****99886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF01963	1.1E-22	82	347	IPR002816	Pheromone shutdown, TraB
SuperFamily	SSF52172	6.4E-31	403	531	IPR011006	CheY-like superfamily
Gene3D	G3DSA:3.40.50.2300	1.9E-32	403	532	No hit	No description
SMART	SM00448	8.3E-24	403	515	IPR001789	Signal transduction response regulator, receiver domain
PROSITE profile	PS50110	37.285	404	519	IPR001789	Signal transduction response regulator, receiver domain
Pfam	PF00072	1.9E-19	405	512	IPR001789	Signal transduction response regulator, receiver domain
CDD	cd00156	8.00E-24	406	519	No hit	No description
PROSITE profile	PS51294	9.441	571	632	IPR017930	Myb domain
SuperFamily	SSF46689	1.2E-18	574	633	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.7E-24	575	633	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.4E-25	576	629	IPR006447	Myb domain, plants
Pfam	PF00249	1.7E-5	581	628	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 885 aa Download sequence Send to blast
MEALKSTAIP IFRSYPVSFS TKSLKPINVS IKPPPSDFDF RSEISRDSRA AIAEAHPELL 60 DLADDGTLVL VDKTRFGPVP AWRAEFVEPQ AIWLVGTSHI SPKSVKDVER VVRAVKPDNV 120 VVELCRSRQG LLRFKLLVHM AESLVLHLRS KFQVLRAGIM YTLDTGEPDQ KLKSNMFSLS 180 GDGFLGAVGR SINLGGQTAL ALRLLLAVFS SKISSDVNRP FGDEFRAARK ASEEVGAQIV 240 LGDRPIEITL ERAWNALTWT EKLSLVSSVV RGITSESDFS QNNDEESGRS GSSLQLYEKL 300 SFSFPSLLQP LIHERDTYLA WSLKRSKAVN ESKRVVGVIG RGHMNGVIYA LISDQGNLRF 360 RDLAGKKAGE GNSNGFVSRL LQSLVRDTII GVVLMDGKLF VDINILLVDD DATSLAVVSA 420 MLRLCKYQVV TLRNPIEALD TLRARKGFFD LVVTDLHMPQ MNGLQLQKKV MQEFKLPVIM 480 MSADEKPSVI LKSLEEGVAF YMVKPISLDD VKHVWQYAIS PKNVIPNQTI TITQRQLSIE 540 NSSSSSALCL KKEIIKSKST KFKNKKAKQK SIPLRKPKVI WTNSLHNRFL QAIRLIGLHK 600 AVPKKILEFM NVPGLTRENV ASHLQKYRIF LKRVTEKGDH SMKISADYTL LRSSFANSSH 660 FQFQSPLFTS KFQSQHSYFL QNKQLMPPLN NQCPPNNLLN LTSLSNPNLE EPSMGKSSSL 720 LTLNKSNFPC NGFVVSSSAQ DDQNFVSIEN ENLNCSSNGT GRTTTTGEVQ MICLGQNGLC 780 NNIVQAPHDL NDRGLSLDNN GGKHQNLPMN SNKNVEENGP ILVSSEEEEG KAANDTIAFG 840 DIDENQNCFD VLSEIFMGHN QNQTSLRGWD DDILEMLFGD GSSSS

Sequence ? help Back to Top

Protein Sequence Length: 885 aa Download sequence Send to blast

MEALKSTAIP IFRSYPVSFS TKSLKPINVS IKPPPSDFDF RSEISRDSRA AIAEAHPELL  60
DLADDGTLVL VDKTRFGPVP AWRAEFVEPQ AIWLVGTSHI SPKSVKDVER VVRAVKPDNV  120
VVELCRSRQG LLRFKLLVHM AESLVLHLRS KFQVLRAGIM YTLDTGEPDQ KLKSNMFSLS  180
GDGFLGAVGR SINLGGQTAL ALRLLLAVFS SKISSDVNRP FGDEFRAARK ASEEVGAQIV  240
LGDRPIEITL ERAWNALTWT EKLSLVSSVV RGITSESDFS QNNDEESGRS GSSLQLYEKL  300
SFSFPSLLQP LIHERDTYLA WSLKRSKAVN ESKRVVGVIG RGHMNGVIYA LISDQGNLRF  360
RDLAGKKAGE GNSNGFVSRL LQSLVRDTII GVVLMDGKLF VDINILLVDD DATSLAVVSA  420
MLRLCKYQVV TLRNPIEALD TLRARKGFFD LVVTDLHMPQ MNGLQLQKKV MQEFKLPVIM  480
MSADEKPSVI LKSLEEGVAF YMVKPISLDD VKHVWQYAIS PKNVIPNQTI TITQRQLSIE  540
NSSSSSALCL KKEIIKSKST KFKNKKAKQK SIPLRKPKVI WTNSLHNRFL QAIRLIGLHK  600
AVPKKILEFM NVPGLTRENV ASHLQKYRIF LKRVTEKGDH SMKISADYTL LRSSFANSSH  660
FQFQSPLFTS KFQSQHSYFL QNKQLMPPLN NQCPPNNLLN LTSLSNPNLE EPSMGKSSSL  720
LTLNKSNFPC NGFVVSSSAQ DDQNFVSIEN ENLNCSSNGT GRTTTTGEVQ MICLGQNGLC  780
NNIVQAPHDL NDRGLSLDNN GGKHQNLPMN SNKNVEENGP ILVSSEEEEG KAANDTIAFG  840
DIDENQNCFD VLSEIFMGHN QNQTSLRGWD DDILEMLFGD GSSSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1irz_A	6e-20	575	635	4	64	ARR10-B
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681848	1e-126	LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBank	LN713260	1e-126	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A498KU08	0.0	A0A498KU08_MALDO; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16110.1	5e-50	response regulator 2