PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla006112 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | ERF | ||||||||
Protein Properties | Length: 176aa MW: 20068.6 Da PI: 7.2848 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.9 | 5.1e-18 | 7 | 51 | 2 | 50 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaar 50 +y+GVr+++ +g+Wv+eIr+p +r++lg+f tae+Aa+a+++a+ Cla006112 7 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAA 51 69******9.**********8.....334********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.69E-27 | 6 | 55 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.6E-28 | 7 | 58 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.6E-11 | 7 | 52 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.019 | 7 | 65 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-17 | 7 | 56 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 9.0E-29 | 7 | 67 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-11 | 8 | 19 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-11 | 30 | 46 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MARPQQRYRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDEA ATIMCCPNNL 60 PTNHSAPPHL SSAPPSSKLL TPTLIDKLQR CRMASLQMTK TQFALRKSAD PTHRPATKLH 120 DGHWSETEVK WVAGGEAEEV RRLEDDHVEQ MIQELLDLGS FEFCPNDNHN FGSTNN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681874 | 1e-132 | LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031. | |||
GenBank | LN713261 | 1e-132 | LN713261.1 Cucumis melo genomic chromosome, chr_7. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008454208.1 | 1e-104 | PREDICTED: ethylene-responsive transcription factor ERF003-like | ||||
Swissprot | Q94AW5 | 3e-54 | ERF03_ARATH; Ethylene-responsive transcription factor ERF003 | ||||
TrEMBL | A0A1S3BY29 | 1e-102 | A0A1S3BY29_CUCME; ethylene-responsive transcription factor ERF003-like | ||||
STRING | XP_008454208.1 | 1e-103 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF21391 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25190.1 | 2e-37 | ERF family protein |
Publications ? help Back to Top | |||
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