PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla006015 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | WRKY | ||||||||
Protein Properties | Length: 251aa MW: 27970.9 Da PI: 10.2125 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102.4 | 2.6e-32 | 184 | 243 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 +D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ edp+++++tYegeHnh+k Cla006015 184 SDDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEDPSMLIVTYEGEHNHPK 243 69************************9988****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 1.7E-17 | 142 | 181 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 9.2E-35 | 171 | 243 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.986 | 178 | 244 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.84E-28 | 181 | 243 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.3E-40 | 183 | 243 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.4E-28 | 185 | 242 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MEEVEEANKS AIESCHGVLN LLVQPPQDQL HFRNLMVETK EAVFKFKKVI SLLNSGFGHA 60 RVRKFNKIPL PLPQKSLLDS PNYTPHPPNK NLYPFHSGLN ARSFISSLSM DGSVADGSSF 120 HLIGPSSTTT TSADNKRKFS ARGDEGSLKC GSSGKCHCSK KRKHRVKRSI KVPAISNKLA 180 DIPSDDYSWR KYGQKPIKGS PHPRGYYKCS SMRGCPARKH VERCLEDPSM LIVTYEGEHN 240 HPKMSTQSAH T |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-21 | 171 | 241 | 2 | 71 | WRKY transcription factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU984012 | 1e-168 | GU984012.1 Cucumis sativus WRKY protein (WRKY9) mRNA, complete cds. | |||
GenBank | GU984013 | 1e-168 | GU984013.1 Cucumis sativus WRKY protein (WRKY10) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022967410.1 | 1e-138 | probable WRKY transcription factor 21 | ||||
Swissprot | O04336 | 6e-77 | WRK21_ARATH; Probable WRKY transcription factor 21 | ||||
TrEMBL | A0A455PAJ4 | 1e-129 | A0A455PAJ4_CUCMO; WRKY21 | ||||
STRING | GSMUA_Achr9P10740_001 | 1e-101 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2637 | 34 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30590.1 | 3e-79 | WRKY DNA-binding protein 21 |