PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla006006 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | bHLH | ||||||||
Protein Properties | Length: 501aa MW: 55179.9 Da PI: 6.2715 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.7 | 8.7e-13 | 357 | 403 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI +Lq Cla006006 357 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITDLQ 403 799***********************66......*****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 3.9E-37 | 52 | 229 | IPR025610 | Transcription factor MYC/MYB N-terminal |
SuperFamily | SSF47459 | 8.24E-18 | 352 | 415 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.831 | 353 | 402 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.49E-14 | 356 | 407 | No hit | No description |
Pfam | PF00010 | 2.9E-10 | 357 | 403 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.7E-18 | 357 | 415 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.2E-14 | 359 | 408 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS51671 | 8.596 | 435 | 501 | IPR002912 | ACT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 501 aa Download sequence Send to blast |
MGEKFWANEE KRVVVESVVG SEACEILMSL ASSNILPPDS LQFSLGDSSV NQGLSQILDG 60 SSWNYAIFWR VVSLKSGALA LIWGDGNCHD SKIEIGISGG NAQGGKQEEL KRQVLQMLQS 120 SFGGSDEDGY GARREEVSDV KMLYLTSKYY TFMCDSGNSL GESYKFDKSI WASDVTSCLR 180 NYQSRGFLAK VAGFQTLVFV PVKLGVVELG SVKSIPEDQG VLELVRAAFG GSNTAQLKAS 240 PRIFGHELSL GGTKPRSLSI NFSPKLEDDT NFASEGYELQ GLGGNHIFGN SSNGCRGDDN 300 DAKMFPHGNQ EVVGGFNAQT RLSTMEFPRD ESSPQGDDRK PRKRGRKPAN GREEPLNHVE 360 AERQRREKLN QRFYALRAVV PNISKMDKAS LLGDAITYIT DLQMKIKVME TEKQIANGRD 420 KNTEIDFHAR EEDAVVRVSC PLDSHPVSRV IKTFREHQIE AQESNVTTSK DNDKVIHSFS 480 IRTEGGAAEQ LKEKLVAALS K |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 6e-29 | 351 | 417 | 2 | 69 | Transcription factor MYC2 |
5gnj_B | 6e-29 | 351 | 417 | 2 | 69 | Transcription factor MYC2 |
5gnj_E | 6e-29 | 351 | 417 | 2 | 69 | Transcription factor MYC2 |
5gnj_F | 6e-29 | 351 | 417 | 2 | 69 | Transcription factor MYC2 |
5gnj_G | 6e-29 | 351 | 417 | 2 | 69 | Transcription factor MYC2 |
5gnj_I | 6e-29 | 351 | 417 | 2 | 69 | Transcription factor MYC2 |
5gnj_M | 6e-29 | 351 | 417 | 2 | 69 | Transcription factor MYC2 |
5gnj_N | 6e-29 | 351 | 417 | 2 | 69 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 338 | 346 | RKPRKRGRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00099 | PBM | Transfer from AT4G16430 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681835 | 0.0 | LN681835.1 Cucumis melo genomic scaffold, anchoredscaffold00064. | |||
GenBank | LN713258 | 0.0 | LN713258.1 Cucumis melo genomic chromosome, chr_4. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008461882.1 | 0.0 | PREDICTED: transcription factor bHLH3 | ||||
Swissprot | A0A3Q7H216 | 1e-178 | MTB3_SOLLC; Transcription factor MTB3 | ||||
TrEMBL | A0A1S3CG81 | 0.0 | A0A1S3CG81_CUCME; transcription factor bHLH3 | ||||
STRING | XP_008461882.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8263 | 34 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16430.1 | 1e-166 | bHLH family protein |
Publications ? help Back to Top | |||
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