PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla005970

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

NAC

Protein Properties

Length: 289aa MW: 32919.2 Da PI: 6.3437

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla005970	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	130.3	1.4e-40	10	126	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 lppGfrF P+deelv++yL kk+ ++++ ++ e+d++++ePw+Lp + s rd+kyatg r+nrat+ gyWkatgkd++v++ +ge Cla005970 10 LPPGFRFYPSDEELVCHYLYKKIMNEQVLK-GTLVEIDLHTCEPWQLP-----G-------SFRDRKYATGFRTNRATTCGYWKATGKDRTVVDPsTGEI 96 79**********************9655.78***********.....2.......4699************************9978899 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrle 129 vg++ktLvfy++rap+g kt W+mhe+rle Cla005970 97 VGMRKTLVFYRNRAPNGIKTGWIMHEFRLE 126 *************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.09E-52	8	144	IPR003441	NAC domain
PROSITE profile	PS51005	47.017	10	144	IPR003441	NAC domain
Pfam	PF02365	9.3E-24	11	125	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MGLKDIGASL PPGFRFYPSD EELVCHYLYK KIMNEQVLKG TLVEIDLHTC EPWQLPGSFR 60 DRKYATGFRT NRATTCGYWK ATGKDRTVVD PSTGEIVGMR KTLVFYRNRA PNGIKTGWIM 120 HEFRLEAPHR PPKEDWVLCR VFQKGKQEEY NTKLINQHFT FGNFERVPSV VIRAPSPPPT 180 DPSQIAAMPC DYNVDIDIAS LSSSSMAPHQ ISHSHIGSCS FLHLLQLPQE KNDNNNTNPK 240 TDQLFCPKNN ESDYGVLWDM DLEEHTFQEG VSSNLDQMAF DVDSSLVFL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-39	9	144	16	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-39	9	144	16	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-39	9	144	16	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-39	9	144	16	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-39	9	144	19	168	NAC domain-containing protein 19
3swm_B	2e-39	9	144	19	168	NAC domain-containing protein 19
3swm_C	2e-39	9	144	19	168	NAC domain-containing protein 19
3swm_D	2e-39	9	144	19	168	NAC domain-containing protein 19
3swp_A	2e-39	9	144	19	168	NAC domain-containing protein 19
3swp_B	2e-39	9	144	19	168	NAC domain-containing protein 19
3swp_C	2e-39	9	144	19	168	NAC domain-containing protein 19
3swp_D	2e-39	9	144	19	168	NAC domain-containing protein 19
4dul_A	2e-39	9	144	16	165	NAC domain-containing protein 19
4dul_B	2e-39	9	144	16	165	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681827	3e-83	LN681827.1 Cucumis melo genomic scaffold, anchoredscaffold00018.
GenBank	LN713258	3e-83	LN713258.1 Cucumis melo genomic chromosome, chr_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004152054.1	0.0	PREDICTED: protein CUP-SHAPED COTYLEDON 3
TrEMBL	A0A0A0LB56	0.0	A0A0A0LB56_CUCSA; Uncharacterized protein
STRING	XP_004152054.1	0.0	(Cucumis sativus)
STRING	XP_004169258.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4381	33	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28530.1	2e-78	NAC domain containing protein 74