PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla005677
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family NAC
Protein Properties Length: 363aa    MW: 42201.3 Da    PI: 6.7195
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla005677genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM176.19.7e-55671981129
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.k 96 
                +ppGfrFhPtdeel+++yL+kkv++k+++l +vik+vd+yk+ePwdL++  ++ + ++++wyfFs++dkky+t++r+nratk+g+Wkatg+dk+++s+ +
  Cla005677  67 VPPGFRFHPTDEELIDYYLRKKVSSKRIDL-DVIKDVDLYKIEPWDLQElcRMGGeDQEDWYFFSHKDKKYPTSTRTNRATKEGFWKATGRDKAIYSRhG 165
                69****************************.9***************9545555425559*************************************966 PP

        NAM  97 gelvglkktLvfykgrapkgektdWvmheyrle 129
                + l+g++ktLvfy+grap+g k+dW+mheyrle
  Cla005677 166 HGLIGMRKTLVFYRGRAPNGLKSDWIMHEYRLE 198
                678****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.32E-5963231IPR003441NAC domain
PROSITE profilePS5100558.70267231IPR003441NAC domain
PfamPF023652.6E-2868197IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MESSRKTKLQ TLSLGEYIVT LAACFLGVCS SSKLFRNNDA STSMHPLIPT FSGVGQLGEK  60
MNTIPHVPPG FRFHPTDEEL IDYYLRKKVS SKRIDLDVIK DVDLYKIEPW DLQELCRMGG  120
EDQEDWYFFS HKDKKYPTST RTNRATKEGF WKATGRDKAI YSRHGHGLIG MRKTLVFYRG  180
RAPNGLKSDW IMHEYRLETT ENGPSQASLQ PLAYYKYRHE EGWVVCRVFK KKMTTIQKMG  240
DYESPYWQED QISFMPDIDS PNQISHLCKH EVDNHPHFAM FDDTFPQLHR RPELTPDVLS  300
CTYDLRANAP SSSQTFFHAL DNQSMDWRAM DQYVASQLST DRDDHHGREE EANYSEGTKY  360
TSE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-476623214169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818601e-139LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021.
GenBankLN7132601e-139LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004147975.10.0PREDICTED: NAC domain-containing protein 7-like
SwissprotQ9FWX21e-103NAC7_ARATH; NAC domain-containing protein 7
TrEMBLA0A0A0L6Z70.0A0A0A0L6Z7_CUCSA; Uncharacterized protein
STRINGXP_004159532.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2452433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.11e-105NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]