PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla005677 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | NAC | ||||||||
Protein Properties | Length: 363aa MW: 42201.3 Da PI: 6.7195 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 176.1 | 9.7e-55 | 67 | 198 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.k 96 +ppGfrFhPtdeel+++yL+kkv++k+++l +vik+vd+yk+ePwdL++ ++ + ++++wyfFs++dkky+t++r+nratk+g+Wkatg+dk+++s+ + Cla005677 67 VPPGFRFHPTDEELIDYYLRKKVSSKRIDL-DVIKDVDLYKIEPWDLQElcRMGGeDQEDWYFFSHKDKKYPTSTRTNRATKEGFWKATGRDKAIYSRhG 165 69****************************.9***************9545555425559*************************************966 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrle 129 + l+g++ktLvfy+grap+g k+dW+mheyrle Cla005677 166 HGLIGMRKTLVFYRGRAPNGLKSDWIMHEYRLE 198 678****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.32E-59 | 63 | 231 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.702 | 67 | 231 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.6E-28 | 68 | 197 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MESSRKTKLQ TLSLGEYIVT LAACFLGVCS SSKLFRNNDA STSMHPLIPT FSGVGQLGEK 60 MNTIPHVPPG FRFHPTDEEL IDYYLRKKVS SKRIDLDVIK DVDLYKIEPW DLQELCRMGG 120 EDQEDWYFFS HKDKKYPTST RTNRATKEGF WKATGRDKAI YSRHGHGLIG MRKTLVFYRG 180 RAPNGLKSDW IMHEYRLETT ENGPSQASLQ PLAYYKYRHE EGWVVCRVFK KKMTTIQKMG 240 DYESPYWQED QISFMPDIDS PNQISHLCKH EVDNHPHFAM FDDTFPQLHR RPELTPDVLS 300 CTYDLRANAP SSSQTFFHAL DNQSMDWRAM DQYVASQLST DRDDHHGREE EANYSEGTKY 360 TSE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-47 | 66 | 232 | 14 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681860 | 1e-139 | LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021. | |||
GenBank | LN713260 | 1e-139 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004147975.1 | 0.0 | PREDICTED: NAC domain-containing protein 7-like | ||||
Swissprot | Q9FWX2 | 1e-103 | NAC7_ARATH; NAC domain-containing protein 7 | ||||
TrEMBL | A0A0A0L6Z7 | 0.0 | A0A0A0L6Z7_CUCSA; Uncharacterized protein | ||||
STRING | XP_004159532.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF24524 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12260.1 | 1e-105 | NAC 007 |
Publications ? help Back to Top | |||
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