PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla005614
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 337aa    MW: 37620.2 Da    PI: 4.8195
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla005614genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.1e-19185235255
        AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                +y+GVr+++ +g+++AeIrdp   + +  r++lg+f ta eAa+a+++a+ kl+g
  Cla005614 185 HYRGVRQRP-WGKFAAEIRDP---NrRGSRVWLGTFETAIEAARAYDRAAFKLRG 235
                6********.**********9...4334*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.81E-23185244IPR016177DNA-binding domain
PfamPF008473.1E-14185235IPR001471AP2/ERF domain
CDDcd000184.95E-31185243No hitNo description
Gene3DG3DSA:3.30.730.101.2E-32185244IPR001471AP2/ERF domain
SMARTSM003801.4E-38185249IPR001471AP2/ERF domain
PROSITE profilePS5103224.447185243IPR001471AP2/ERF domain
PRINTSPR003671.5E-13186197IPR001471AP2/ERF domain
PRINTSPR003671.5E-13225245IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MEFVNLEEAA ALENIKLHLL GELSPLPRIL TSDDNLCVSS SDRSVSSDSS STSNCVLNIS  60
DYFNSNEIFE FSSDLSPISS NDDFFGLEIK PNVIDLTTPE STELLEFETK PVFEDLSSRT  120
LYSNNSFEVE SKISQVANSN RKRANLKISL PNNTTQWINF DAAAEKKNPV VVQRSKNVEA  180
ERKVHYRGVR QRPWGKFAAE IRDPNRRGSR VWLGTFETAI EAARAYDRAA FKLRGSKAIL  240
NFPLEAANSY SEPVAAGKRR REEEVEEVIE AVAVKKERTA EEVNPPAADV GYLKDMPLTP  300
SSWSMVWDGE TKGVFNIPPL SPLSPHPAFG FPQLMVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-30185244261ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022923447.11e-180ethylene-responsive transcription factor 5-like
SwissprotO803414e-61EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBLA0A1S3BL691e-171A0A1S3BL69_CUCME; ethylene-responsive transcription factor 5
STRINGXP_008448805.11e-172(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108534109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.14e-49ethylene responsive element binding factor 5
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]