PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla005508 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | NAC | ||||||||
Protein Properties | Length: 325aa MW: 36950.3 Da PI: 8.3176 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 164.2 | 4.5e-51 | 20 | 148 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk...kge 98 pGfrFhPtdeelv++yL++kve+++++l e ik++diyk++PwdLp + k ++kewyf++kr +ky+++ r+nr+t sg+Wkatg dk+v+s+ ++e Cla005508 20 PGFRFHPTDEELVSFYLRRKVEKRPISL-ELIKQIDIYKHNPWDLPyGSSKVGDKEWYFYCKRGRKYKNSIRPNRVTGSGFWKATGIDKPVYSNggeGNE 118 9***************************.99***************66777899***************************************9766666 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +glkktLv+y+g+a kg+ktdW+mhe+rl Cla005508 119 CIGLKKTLVYYRGSAGKGSKTDWMMHEFRL 148 7***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 52.941 | 18 | 183 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 8.76E-55 | 19 | 183 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.9E-25 | 20 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
METPEVCNGG DGDDDQIPLP GFRFHPTDEE LVSFYLRRKV EKRPISLELI KQIDIYKHNP 60 WDLPYGSSKV GDKEWYFYCK RGRKYKNSIR PNRVTGSGFW KATGIDKPVY SNGGEGNECI 120 GLKKTLVYYR GSAGKGSKTD WMMHEFRLPP PNPTNNPKLL IQPNSKNFAQ EAEIWTLCRI 180 FKRNVSGRRY GSSGNWNNKQ AASTAATTTT TIKNPTTVEK NSEIMVGGAE KGNNNGEISY 240 INFSCESMII QTEKKPLLLD PNYLSNYNNH QQEWNNNSNY DQYSSCSSSG IISPPIAYPT 300 NQLVDVNDFF TNSNWDELRS MVDML |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-48 | 20 | 189 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-48 | 20 | 189 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-48 | 20 | 189 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-48 | 20 | 189 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-48 | 20 | 189 | 22 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-48 | 20 | 189 | 22 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-48 | 20 | 189 | 22 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-48 | 20 | 189 | 22 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-48 | 20 | 189 | 22 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-48 | 20 | 189 | 22 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-48 | 20 | 189 | 22 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-48 | 20 | 189 | 22 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-48 | 20 | 189 | 19 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-48 | 20 | 189 | 19 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN689546 | 2e-90 | LN689546.1 Cucumis melo genomic scaffold, unassembled_sequence36985. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004139890.2 | 1e-160 | PREDICTED: transcription factor JUNGBRUNNEN 1-like | ||||
TrEMBL | A0A0A0K418 | 1e-159 | A0A0A0K418_CUCSA; Uncharacterized protein | ||||
STRING | XP_004159185.1 | 1e-160 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1013 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 4e-81 | NAC domain containing protein 42 |