PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla005481

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

G2-like

Protein Properties

Length: 367aa MW: 40321.9 Da PI: 6.4534

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla005481	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	39.6	1.1e-12	32	57	1	26
G2-like 1 kprlrWtpeLHerFveaveqLGGsek 26 kprlrWt eLHerFv+av+qLGG++ Cla005481 32 KPRLRWTVELHERFVDAVTQLGGPDS 57 79*********************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.2E-12	29	60	IPR009057	Homeodomain-like
Pfam	PF14379	4.9E-25	108	154	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010088	Biological Process	phloem development
GO:0010089	Biological Process	xylem development
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MFHPKKASTM NSHERGMCVQ GDSGLVLTTD PKPRLRWTVE LHERFVDAVT QLGGPDSYTK 60 DHHESYGCKG SYTLPPQEPS PASGLELHRN TASSSNMINR TMNDGNSHMV DAIRMQMEVQ 120 RRLHEQLEVQ RHLQLRIEAQ GKYMQSILEK ACQTLAGENM AASGGYKAMG GIPNNNNNQQ 180 GISDMAGAGG IKDFGSPLGF PSFQDLNLYG GDHLDLQQNV DGFMPHNDSL LCLGKKKPRP 240 PPSTPNYGAS SGKGALDWPD DLRLQDIGMA PPSCVGQQED DFKGIGATLV ERDHLEEMYE 300 AKPVVSDEGI GDHKKYDINN NDNNNNNNNN NASIKLQRPS PRRAPLSMDR ANHPLTTAPQ 360 STHSPFG

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MFHPKKASTM NSHERGMCVQ GDSGLVLTTD PKPRLRWTVE LHERFVDAVT QLGGPDSYTK  60
DHHESYGCKG SYTLPPQEPS PASGLELHRN TASSSNMINR TMNDGNSHMV DAIRMQMEVQ  120
RRLHEQLEVQ RHLQLRIEAQ GKYMQSILEK ACQTLAGENM AASGGYKAMG GIPNNNNNQQ  180
GISDMAGAGG IKDFGSPLGF PSFQDLNLYG GDHLDLQQNV DGFMPHNDSL LCLGKKKPRP  240
PPSTPNYGAS SGKGALDWPD DLRLQDIGMA PPSCVGQQED DFKGIGATLV ERDHLEEMYE  300
AKPVVSDEGI GDHKKYDINN NDNNNNNNNN NASIKLQRPS PRRAPLSMDR ANHPLTTAPQ  360
STHSPFG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269\|PubMed:14614507, ECO:0000269\|PubMed:18523061, ECO:0000269\|PubMed:25081480, ECO:0000269\|PubMed:26239308, ECO:0000305\|PubMed:15592750}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269\|PubMed:15592750}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681800	1e-159	LN681800.1 Cucumis melo genomic scaffold, anchoredscaffold00017.
GenBank	LN713255	1e-159	LN713255.1 Cucumis melo genomic chromosome, chr_1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008447069.1	0.0	PREDICTED: myb family transcription factor APL-like isoform X1
Swissprot	Q9SAK5	2e-77	APL_ARATH; Myb family transcription factor APL
TrEMBL	A0A1S3BH57	0.0	A0A1S3BH57_CUCME; myb family transcription factor APL-like isoform X1
STRING	XP_008447069.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4964	32	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79430.2	4e-78	G2-like family protein

Publications ? help Back to Top
Martínez-Navarro AC,Galván-Gordillo SV,Xoconostle-Cázares B,Ruiz-Medrano R Vascular gene expression: a hypothesis. Front Plant Sci, 2013. 4: p. 261 [PMID:23882276] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kondo Y, et al. Vascular Cell Induction Culture System Using Arabidopsis Leaves (VISUAL) Reveals the Sequential Differentiation of Sieve Element-Like Cells. Plant Cell, 2016. 28(6): p. 1250-62 [PMID:27194709] Shibuta M,Abe M FE Controls the Transcription of Downstream Flowering Regulators Through Two Distinct Mechanisms in Leaf Phloem Companion Cells. Plant Cell Physiol., 2017. 58(11): p. 2017-2025 [PMID:29036620]