PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla005475
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C3H
Protein Properties Length: 278aa    MW: 30676.9 Da    PI: 7.8528
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla005475genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.96.2e-127499227
               -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
               +++ C++f++t  Ck+G+rCkF+H++
  Cla005475 74 GEPDCPYFLKTQKCKFGSRCKFNHPK 99
               5799********************96 PP
2zf-CCCH36.58e-12121145327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                ++lC f+ +tG Ck+G +CkF+H++
  Cla005475 121 EPLCAFYVKTGNCKFGVNCKFHHPK 145
                79*********************96 PP
3zf-CCCH37.63.7e-12204228226
                -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                +++ C+f+++tG CkyG +C+++H+
  Cla005475 204 GEVDCPFYLKTGSCKYGTTCRYNHP 228
                6899********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.0E-57299IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.61572100IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-97499IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-677101IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.7E-57898IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.46118146IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-6118145IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6121146IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-9121145IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-5123144IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.54202230IPR000571Zinc finger, CCCH-type
SMARTSM003564.2E-6202229IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-9204228IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.1E-5207229IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-5208227IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MPYATSLLTR KVPEALSQQS PCYAPAYSHH WLGFGSHFMG MPSCTLDMEV HNRSCSSIEV  60
PQIANSEDLP ERLGEPDCPY FLKTQKCKFG SRCKFNHPKD RSDSVGAEKS DASTLPERPS  120
EPLCAFYVKT GNCKFGVNCK FHHPKDIQIL SGEENGNSEQ TLIAKTEERI GDFKLVKPPV  180
SFSPALMHNS KGLPIRPNNS LLQGEVDCPF YLKTGSCKYG TTCRYNHPDR NAINPSTPAM  240
VHPAMVSAAN MNTGIINPSN AIYQAVDPRL IQPLVSQS
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818005e-69LN681800.1 Cucumis melo genomic scaffold, anchoredscaffold00017.
GenBankLN7132555e-69LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004148293.11e-142PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X1
SwissprotQ941Q31e-69C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A0A0K4691e-142A0A0A0K469_CUCSA; Uncharacterized protein
STRINGXP_004148293.11e-142(Cucumis sativus)
STRINGXP_004173786.11e-144(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75583345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.15e-72floral homeotic protein (HUA1)