PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla005472 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | NAC | ||||||||
Protein Properties | Length: 320aa MW: 36920.5 Da PI: 7.8939 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 172.3 | 1.5e-53 | 11 | 143 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95 +ppGfrFhPtdeel+ +yL+kkv+ + +el +vi+evd++k+ePwdL+ k ++ + +++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk++++ Cla005472 11 VPPGFRFHPTDEELLYYYLRKKVSYEAIEL-DVIREVDLNKLEPWDLKdKcRIGSgHQNEWYFFSHKDKKYPTGTRTNRATSAGFWKATGRDKTIHTGnc 109 69****************************.9***************843444443666*************************************9888 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 +++ +g++ktLvfy+grap+g+ktdW+mheyrle Cla005472 110 NSKRIGMRKTLVFYTGRAPHGQKTDWIMHEYRLE 143 8899****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-59 | 5 | 162 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.756 | 11 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.9E-28 | 12 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003002 | Biological Process | regionalization | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0010455 | Biological Process | positive regulation of cell fate commitment | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MMPENGQQLS VPPGFRFHPT DEELLYYYLR KKVSYEAIEL DVIREVDLNK LEPWDLKDKC 60 RIGSGHQNEW YFFSHKDKKY PTGTRTNRAT SAGFWKATGR DKTIHTGNCN SKRIGMRKTL 120 VFYTGRAPHG QKTDWIMHEY RLEDDNPELH EDGWVVCRVF KKKSHKPEVP QEQQLDYYTH 180 TKLGSSSASV MGAEMGEPKN NNNHMQEPYN NDYSFDGCMQ LPQLFSPESS VATPISLNAA 240 ATVECPQNIW RLSCGLVQHE RLNTDWSFLN RLLALDQQSR SKSTLSDDLT MGHSNSRKFS 300 FPFPYPYPLA SGADFIKFSK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-52 | 8 | 164 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-52 | 8 | 164 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-52 | 8 | 164 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-52 | 8 | 164 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
4dul_A | 3e-52 | 8 | 164 | 14 | 167 | NAC domain-containing protein 19 |
4dul_B | 3e-52 | 8 | 164 | 14 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 160 | 164 | KKKSH |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:19081078, ECO:0000269|PubMed:20197506}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00250 | DAP | Transfer from AT1G79580 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By FEZ in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681800 | 1e-140 | LN681800.1 Cucumis melo genomic scaffold, anchoredscaffold00017. | |||
GenBank | LN713255 | 1e-140 | LN713255.1 Cucumis melo genomic chromosome, chr_1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004148307.1 | 0.0 | PREDICTED: NAC domain-containing protein 76-like | ||||
Swissprot | Q9MA17 | 1e-101 | SMB_ARATH; Protein SOMBRERO | ||||
TrEMBL | A0A0A0K475 | 0.0 | A0A0A0K475_CUCSA; Uncharacterized protein | ||||
STRING | XP_004148307.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7204 | 34 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79580.3 | 1e-103 | NAC family protein |
Publications ? help Back to Top | |||
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