PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla005230

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

NF-YB

Protein Properties

Length: 134aa MW: 15544.2 Da PI: 4.5038

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla005230	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	142.3	1.2e-44	12	100	7	95
NF-YB 7 flPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 +lPianv+rimkk+lP++akisk+ak t+qec+sefisfvtsea++kc++e+r+t+ngdd++wa+++ G+++y+e ++yl kyre+e+ Cla005230 12 ELPIANVGRIMKKILPQKAKISKEAKTTMQECASEFISFVTSEAAQKCHKENRRTLNGDDICWAFGSYGLDNYAEISEKYLLKYREVER 100 69*************************************************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	6.3E-44	8	132	IPR009072	Histone-fold
Pfam	PF00808	1.9E-26	12	75	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	2.95E-33	12	129	IPR009072	Histone-fold
PRINTS	PR00615	4.1E-14	40	58	No hit	No description
PRINTS	PR00615	4.1E-14	59	77	No hit	No description
PRINTS	PR00615	4.1E-14	78	96	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 134 aa Download sequence Send to blast
MGDQHNGDEF VELPIANVGR IMKKILPQKA KISKEAKTTM QECASEFISF VTSEAAQKCH 60 KENRRTLNGD DICWAFGSYG LDNYAEISEK YLLKYREVER IKADQYKCKI TQQLQQGEEE 120 DDDDDDEQEH NNQF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	3e-34	13	97	8	92	Transcription factor HapC (Eurofung)
4g92_B	3e-34	13	97	8	92	Transcription factor HapC (Eurofung)
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681806	1e-111	LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025.
GenBank	LN713256	1e-111	LN713256.1 Cucumis melo genomic chromosome, chr_2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008451142.1	2e-64	PREDICTED: nuclear transcription factor Y subunit B-4
Swissprot	O04027	8e-43	NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
TrEMBL	A0A1S3BRX1	5e-63	A0A1S3BRX1_CUCME; nuclear transcription factor Y subunit B-4
STRING	XP_008451142.1	9e-64	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF805	32	131

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09030.1	3e-45	nuclear factor Y, subunit B4

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]