PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla005181 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | GATA | ||||||||
Protein Properties | Length: 160aa MW: 17269.8 Da PI: 9.4116 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 62 | 7.4e-20 | 19 | 52 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C+ C+ttkTplWR gp g+k+LCnaCG+++rk++ Cla005181 19 CVDCKTTKTPLWRVGPTGPKSLCNACGIRFRKRR 52 ********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 8.0E-12 | 13 | 75 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 9.03E-13 | 16 | 53 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 5.7E-16 | 18 | 52 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 3.22E-12 | 19 | 53 | No hit | No description |
PROSITE profile | PS50114 | 12.492 | 19 | 49 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.3E-17 | 19 | 52 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MGLMDLRQKG LLLPDTKYCV DCKTTKTPLW RVGPTGPKSL CNACGIRFRK RRISTTGTNK 60 GYDRKRGVHN NGSTAMTTVS AATSSATTTT SGSGGGDGDE NLGECESLRM TLMMALEEEE 120 VKNLPSAVKK QRCQRPKKLG EEEKQAAVSL MELSCGSVFS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008450587.1 | 8e-53 | PREDICTED: GATA transcription factor 16-like | ||||
TrEMBL | A0A1S3BQ71 | 2e-51 | A0A1S3BQ71_CUCME; GATA transcription factor 16-like | ||||
STRING | XP_004173842.1 | 5e-53 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1569 | 32 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49300.1 | 7e-21 | GATA transcription factor 16 |