PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla005152
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C3H
Protein Properties Length: 152aa    MW: 17244.2 Da    PI: 7.9056
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla005152genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.81.9e-085777626
               -SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH  6 CrffartGtCkyGdrCkFaHg 26
               C++f+ tG+C+yGd+Ck+ H+
  Cla005152 57 CNRFLTTGFCQYGDSCKYFHP 77
               ******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004511.2E-4338IPR003604Zinc finger, U1-type
SuperFamilySSF576671.45E-13446No hitNo description
PfamPF062203.4E-9536IPR013085Zinc finger, U1-C type
SuperFamilySSF902299.94E-75079IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.9815279IPR000571Zinc finger, CCCH-type
SMARTSM003560.0085378IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-55677IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-65777IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MPLGKYYCDY CEKQFQDTPF ARKRHLQSLS HQKAKALWFD SFNQPFSDSF HFRRGFCNRF  60
LTTGFCQYGD SCKYFHPNNN NTTHNSTSHP IANIPENNQP PNIPVNPFAD GSSFTGSLVS  120
DSMGRTSWGN LPPSLMPPPE GGYPPLPFVD WG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008450521.11e-85PREDICTED: zinc finger CCCH domain-containing protein 3
SwissprotQ0JP117e-47C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBLA0A1S3BQ253e-84A0A1S3BQ25_CUCME; zinc finger CCCH domain-containing protein 3
STRINGXP_008450521.15e-85(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF119592833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.11e-27C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]