PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla005103
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family TALE
Protein Properties Length: 826aa    MW: 92133.7 Da    PI: 6.5101
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla005103genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.52.6e-096236601954
                HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                Fe   ++yp+ +++  LA+++gL+ +qV++WF N R +
  Cla005103 623 FEHflHPYPTDTDKHMLATQTGLSRNQVSNWFINARVR 660
                564459******************************87 PP
2BELL114.46e-37479547472
       BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                e q+kkakLl +leeV++rYkqy++q+q+v+ssFe vagl sa+pY+slAlk++SrhFr+Lk+ai+eq+
  Cla005103 479 EYQQKKAKLLYMLEEVCRRYKQYHQQMQMVVSSFESVAGLSSATPYISLALKTVSRHFRSLKNAISEQL 547
                88*****************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.2E-49386545IPR006563POX domain
PfamPF075267.6E-43391544IPR006563POX domain
PROSITE profilePS5007112.147601664IPR001356Homeobox domain
SMARTSM003891.8E-8604668IPR001356Homeobox domain
CDDcd000864.47E-11604665No hitNo description
SuperFamilySSF466897.27E-17605670IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-27607668IPR009057Homeodomain-like
PfamPF059203.9E-18621660IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 826 aa     Download sequence    Send to blast
MEHSYGFEQH VAQQSRRDKL RVPQNYLRVG ELTRNSDEQL SFHNSEHLGL DLDLVRIQSY  60
NKDAILTHDH LSSLPSEMIN FSRDSNVLSH QRDMMLRQEL EDPAQSSRQI VTDASGGIVS  120
NSVDYWKSSH QSCDWVVNCG SNSFGGEMLN QEVTDSTVYS LKPTCIGFQT SSSFNNPSNE  180
TFNQDGQKRI GGELHLPPIY QNTLQDVVTS ASIRTQGLEM ASIVQHNFTE INQTAACEGS  240
GNELALLPVY RDQSNVLPYD STGSWTDRTF YNCRSWIGEL GSIARKTDEE LRTFMSDSNP  300
QGLSLSLSSN PPSKLPTTQF VESEELQESI TVLKNTQESK TVKSENLCRL PKPTSIGNKN  360
YGKSLQDVMG VPVNPYRNTG PLGPFTGYAT ILKSSKFLKP AQLLLDEFCG SSGHYKFFQP  420
CEVFEKTPGE VGVSAALNAF RNEAVKENSS CADASTFCGS NESNVSGVGS ISSESHQPEY  480
QQKKAKLLYM LEEVCRRYKQ YHQQMQMVVS SFESVAGLSS ATPYISLALK TVSRHFRSLK  540
NAISEQLKYL RKVLGEDLSS PSAGTSGSKG GDANSVRLKY MEQSFQKQKS GIVNIGFLES  600
QNAWRPQRGL PERAVAILRA WLFEHFLHPY PTDTDKHMLA TQTGLSRNQV SNWFINARVR  660
VWKPMVEEIH MLETKGMAEM NNKSHGMRDG SSTLEKTAGW TSSERQPLKN HGVTNEMASH  720
HLQCFGVDSL SGDRNGLGCS DQQWDQGKQS KLDNGVQSNM EGELMGFMPY QASAAEVGGL  780
GAVSLTLGLR HRVESAHHEQ ERHQMQQQDD QLIRHYGSEM IHDFVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A8e-16610668563Homeobox protein Meis2
4xrm_B8e-16610668563Homeobox protein Meis2
4xrs_A6e-16610667158Homeobox protein Meis1
4xrs_B6e-16610667158Homeobox protein Meis1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819280.0LN681928.1 Cucumis melo genomic scaffold, anchoredscaffold00004.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008462889.10.0PREDICTED: homeobox protein BEL1 homolog isoform X2
TrEMBLA0A1S3CHZ10.0A0A1S3CHZ1_CUCME; homeobox protein BEL1 homolog isoform X2
STRINGXP_008462867.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34813257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.13e-81BEL1-like homeodomain 8