PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla005102
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB_related
Protein Properties Length: 516aa    MW: 57809.5 Da    PI: 6.8246
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla005102genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.56.5e-08394442348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E  +lv++v ++G g+W+ I r       +Rt  ++k++w+++l
        Cla005102 394 SWTLSEVMKLVEGVSEYGVGRWTEIKRLQFassSHRTSVDLKDKWRNLL 442
                      5***********************9876558999*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-11387444IPR009057Homeodomain-like
PROSITE profilePS5129413.318387446IPR017930Myb domain
SuperFamilySSF466891.0E-15389452IPR009057Homeodomain-like
SMARTSM007175.3E-9391444IPR001005SANT/Myb domain
PfamPF002493.4E-6394442IPR001005SANT/Myb domain
CDDcd116604.63E-19395443No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MNAASKETMM TSNQATKMFT YEFPDVDSDL SIFPVPEDDV LGVEHFLEPD FNKCFSGSVL  60
DFNTFHSHKC LGIEHFSFAV DFDQIKIDSE SLHSSLTLEG ERTKQEDHDE KLQADDVVCS  120
GNNKLPGTVN SRTTDDIFNL APVSSNASFL GNVDFGSYSQ GFCTTDIGVD LSFAGGNNVG  180
FDQKEGKLMI SSSTGSSGCS GSTTACLDDE NMSDDRPMKR KRLSSCDSKT NFEPNLSKII  240
PFNEGNRGDT LVTEKRLRKP PRRYSEESVE QKSRSNSKKS APKASKDKYL HSESHKQQWQ  300
KKIKAASIVH KDKSFNGGCI QVPFGLPIEE GHSAKKRTCW EPEEVKDNRI LCIKDKYDME  360
SFSAESEDEN TEDECVTKGN NTQKGNSRRK HHISWTLSEV MKLVEGVSEY GVGRWTEIKR  420
LQFASSSHRT SVDLKDKWRN LLKASDTQLQ NRRKVVLGRK QASQQVPESV LCRVRELAAI  480
YPYPRENKSK ESCSAPSTSS FKSTTNNMFV SLPTVM
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819280.0LN681928.1 Cucumis melo genomic scaffold, anchoredscaffold00004.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008462901.10.0PREDICTED: uncharacterized protein LOC103501169 isoform X1
TrEMBLA0A1S3CHY40.0A0A1S3CHY4_CUCME; uncharacterized protein LOC103501169 isoform X1
STRINGXP_008462901.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF150181313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.13e-28TRF-like 6