PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla005093
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB
Protein Properties Length: 316aa    MW: 36045.4 Da    PI: 8.3676
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla005093genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.59.8e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+d++ + G+g +W + +++ g++R++k+c++rw++yl
        Cla005093 14 KGPWSPEEDAKLKDYIDKNGTGgNWISLPQKAGLKRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding38.52.7e-1269116246
                      SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqk 46 
                      g +T+eEd ++  ++   G++    +W+ Ia  ++ gRt++++k++w++
        Cla005093  69 GGFTEEEDRIICTLFSTIGSRsriyRWSIIATQLP-GRTDNDIKNHWNS 116
                      569********************************.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.883966IPR017930Myb domain
SMARTSM007176.7E-111364IPR001005SANT/Myb domain
SuperFamilySSF466891.72E-2413114IPR009057Homeodomain-like
PfamPF002491.4E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-241569IPR009057Homeodomain-like
CDDcd001671.38E-71662No hitNo description
SMARTSM007177.5E-1067120IPR001005SANT/Myb domain
PROSITE profilePS5129415.35467122IPR017930Myb domain
PfamPF002499.1E-1169116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-2170122IPR009057Homeodomain-like
CDDcd001675.40E-871118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MGRSPCCDKS IVKKGPWSPE EDAKLKDYID KNGTGGNWIS LPQKAGLKRC GKSCRLRWLN  60
YLRPNIKHGG FTEEEDRIIC TLFSTIGSRS RIYRWSIIAT QLPGRTDNDI KNHWNSKLKR  120
KLIGMEKKGQ MTTNTTTMTI PSSHNHHQQV FSSFSSQPLS SLIYKDEFND INYYNNSFSP  180
PSTTAIRNFE TLISSIPSNW SNFQITNNIS PCLVQTQETN NLLSNSLMYN HYHQNPLVQM  240
KESCLLGFGS EASCSSSTSD GSYTQINNTS GIMGFQNINP NYYYSDSVMN HQPAANLESY  300
MEDENKTLLE NFMYFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25141227108B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819281e-110LN681928.1 Cucumis melo genomic scaffold, anchoredscaffold00004.
GenBankLN7132661e-110LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022964958.11e-109transcription factor MYB87-like
TrEMBLA0A0A0LUZ61e-138A0A0A0LUZ6_CUCSA; Uncharacterized protein
STRINGXP_004147315.11e-129(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2450233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.13e-73myb domain protein 36