PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla005059 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | Dof | ||||||||
Protein Properties | Length: 285aa MW: 31739.8 Da PI: 8.3877 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 128.8 | 1.6e-40 | 18 | 79 | 2 | 63 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 +e+alkcprCdstntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss Cla005059 18 PEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTQGGTLRNVPVGGGCRKNKRSSS 79 7899******************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 5.0E-27 | 16 | 71 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.1E-34 | 20 | 76 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.655 | 22 | 76 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 24 | 60 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MMVCQNSKDQ IRKPRPQPEQ ALKCPRCDST NTKFCYYNNY SLSQPRYFCK SCRRYWTQGG 60 TLRNVPVGGG CRKNKRSSST NSSTSSSKKS QDHPFGSGGL PHLSYDHQAH DLSLAFARLH 120 KNSCGSGSGP AFNDFDFSIL GMPNGDVLNG FGYNSQSMYY GNDNNMGGIE SNGDQMRLQP 180 YDQDHHHHHN QQYSNATTTA VTVTTMKQEL FGGRDINGGD QSKILWGYPN WQMNNNNNAI 240 DSNTTTTTTM MAAMDFDSGS ARESWNNNAF TNASSWHGLL NSPLM |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN685568 | 1e-130 | LN685568.1 Cucumis melo genomic scaffold, unassembled_sequence33115. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004147273.1 | 1e-150 | PREDICTED: dof zinc finger protein DOF2.1-like | ||||
TrEMBL | A0A0A0LSJ8 | 1e-149 | A0A0A0LSJ8_CUCSA; Uncharacterized protein | ||||
STRING | XP_004147273.1 | 1e-150 | (Cucumis sativus) | ||||
STRING | XP_004163964.1 | 1e-150 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5026 | 30 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60200.1 | 3e-36 | TARGET OF MONOPTEROS 6 |