PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla004973
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 211aa    MW: 22486.9 Da    PI: 5.3028
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla004973genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.4e-191766255
        AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
               +y GVr+++ +grWv+eI+d      ++ r +lg+f+taeeAa+a++ a+++l+g
  Cla004973 17 RYVGVRQRP-SGRWVSEIKD----SlQKVRLWLGTFDTAEEAARAYDDAARALRG 66
               79*******.7*********....4456*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.6661774IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-291774IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-201775IPR016177DNA-binding domain
CDDcd000187.64E-211776No hitNo description
PfamPF008474.0E-131766IPR001471AP2/ERF domain
SMARTSM003808.6E-381780IPR001471AP2/ERF domain
PRINTSPR003678.5E-91829IPR001471AP2/ERF domain
PRINTSPR003678.5E-94056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MAMGSCRKKA SSRGHHRYVG VRQRPSGRWV SEIKDSLQKV RLWLGTFDTA EEAARAYDDA  60
ARALRGSNAR TNFDYLPSGS YDSVPNAGDA NQPIEPPFSF EEGCIEEEGL LGALKAKLFD  120
GKGRRVLQAV AQTTCCSTAD NVNTNNNNNH NGTIIQGGVH QPPEYQVDAV AEVDSGGGSG  180
WLNASAAVGI YAWPVVLGGL EEGGIGDVCV M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1515731271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818951e-87LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBankLN7132631e-87LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008437477.11e-111PREDICTED: ethylene-responsive transcription factor ERF096-like
TrEMBLA0A1S3AUP51e-109A0A1S3AUP5_CUCME; ethylene-responsive transcription factor ERF096-like
STRINGXP_008437477.11e-110(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113333035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-19related to AP2 11