PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla004912
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 271aa    MW: 29541 Da    PI: 5.242
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla004912genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11.1e-1892141255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                +++GVr+++ +g+W+AeIrd    g+r r +lg+++taeeAa  ++ a+ kl g
  Cla004912  92 KFRGVRRRP-WGKWAAEIRDS---GRRVRLWLGTYDTAEEAAMVYDSAAVKLQG 141
                89*******.**********3...356**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.1E-2991150IPR001471AP2/ERF domain
CDDcd000181.22E-2692147No hitNo description
PfamPF008471.0E-1292141IPR001471AP2/ERF domain
SMARTSM003807.6E-3692155IPR001471AP2/ERF domain
SuperFamilySSF541715.17E-2192150IPR016177DNA-binding domain
PROSITE profilePS5103223.16992149IPR001471AP2/ERF domain
PRINTSPR003673.4E-1093104IPR001471AP2/ERF domain
PRINTSPR003673.4E-10115131IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MEVPTIRCRK PISEPPGNFA GRSSTGSRIV RISMTDPDAT DSSSSDEDPV NFTRRRVKRY  60
EVEYTIGTAV DGSGGGARKL KRKRTAVGNV RKFRGVRRRP WGKWAAEIRD SGRRVRLWLG  120
TYDTAEEAAM VYDSAAVKLQ GPGALTNFPT HPPPPFTGEE PSSPTNISSP TSVLYRTQFT  180
ECSPSNRATA TGAVDESPVV DCPFSDDIFK SILLESPLLP EYQSTLIPET PWIGGGAGSG  240
EWAAVGGSDE RVEDHDYFEE ILMGSDPLVV L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-19921491472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17997LKRKRTAVGNVRKFRGVRR
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008437573.11e-142PREDICTED: ethylene-responsive transcription factor CRF1-like
SwissprotQ9SUE37e-40CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLA0A1S3AUH01e-141A0A1S3AUH0_CUCME; ethylene-responsive transcription factor CRF1-like
STRINGXP_008437573.11e-142(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2449833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.22e-31cytokinin response factor 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]